Felix Krueger
Felix Krueger
Bioinformatics at Altos Labs, Cambridge, UK
Verified email at - Homepage
Cited by
Cited by
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
F Krueger, SR Andrews
bioinformatics 27 (11), 1571-1572, 2011
Trim galore
F Krueger
A wrapper tool around Cutadapt and FastQC to consistently apply quality and …, 2015
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
G Ficz, MR Branco, S Seisenberger, F Santos, F Krueger, TA Hore, ...
Nature 473 (7347), 398-402, 2011
S Andrews, F Krueger, A Segonds-Pichon, L Biggins, C Krueger, ...
A quality control tool for high throughput sequence data 370, 2010
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ...
Nature methods 11 (8), 817-820, 2014
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger, W Reik, ...
Science 336 (6083), 934-937, 2012
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
S Seisenberger, S Andrews, F Krueger, J Arand, J Walter, F Santos, ...
Molecular cell 48 (6), 849-862, 2012
Resetting transcription factor control circuitry toward ground-state pluripotency in human
Y Takashima, G Guo, R Loos, J Nichols, G Ficz, F Krueger, D Oxley, ...
Cell 158 (6), 1254-1269, 2014
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
SA Smallwood, S Tomizawa, F Krueger, N Ruf, N Carli, ...
Nature genetics 43 (8), 811-814, 2011
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ...
Nature methods 13 (3), 229-232, 2016
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
SJ Clark, R Argelaguet, CA Kapourani, TM Stubbs, HJ Lee, ...
Nature communications 9 (1), 781, 2018
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
G Ficz, TA Hore, F Santos, HJ Lee, W Dean, J Arand, F Krueger, D Oxley, ...
Cell stem cell 13 (3), 351-359, 2013
DNA methylome analysis using short bisulfite sequencing data
F Krueger, B Kreck, A Franke, SR Andrews
Nature methods 9 (2), 145-151, 2012
Multi-omics profiling of mouse gastrulation at single-cell resolution
R Argelaguet, SJ Clark, H Mohammed, LC Stapel, C Krueger, ...
Nature 576 (7787), 487-491, 2019
Multi-tissue DNA methylation age predictor in mouse
TM Stubbs, MJ Bonder, AK Stark, F Krueger, F von Meyenn, O Stegle, ...
Genome biology 18, 1-14, 2017
Efficient targeted DNA methylation with chimeric dCas9–Dnmt3a–Dnmt3L methyltransferase
P Stepper, G Kungulovski, RZ Jurkowska, T Chandra, F Krueger, ...
Nucleic acids research 45 (4), 1703-1713, 2017
Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data
N Olova, F Krueger, S Andrews, D Oxley, RV Berrens, MR Branco, W Reik
Genome biology 19, 1-19, 2018
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq)
SJ Clark, SA Smallwood, HJ Lee, F Krueger, W Reik, G Kelsey
Nature protocols 12 (3), 534-547, 2017
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism
O Hahn, S Grönke, TM Stubbs, G Ficz, O Hendrich, F Krueger, S Andrews, ...
Genome biology 18, 1-18, 2017
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ...
Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015
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