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Ahmed Mahfouz
Ahmed Mahfouz
Assistant Professor, Leiden University Medical Center
Verified email at lumc.nl - Homepage
Title
Cited by
Cited by
Year
Conserved cell types with divergent features in human versus mouse cortex
RD Hodge, TE Bakken, JA Miller, KA Smith, ER Barkan, LT Graybuck, ...
Nature 573 (7772), 61-68, 2019
9432019
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
5992020
A comparison of automatic cell identification methods for single-cell RNA sequencing data
T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, MJT Reinders, ...
Genome biology 20, 1-19, 2019
3222019
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
I Gupta, PG Collier, B Haase, A Mahfouz, A Joglekar, T Floyd, ...
Nature biotechnology 36 (12), 1197-1202, 2018
2042018
Fast localization of the optic disc using projection of image features
AE Mahfouz, AS Fahmy
IEEE Transactions on Image Processing 19 (12), 3285-3289, 2010
1502010
RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage
RC de Almeida, YFM Ramos, A Mahfouz, W den Hollander, N Lakenberg, ...
Annals of the rheumatic diseases 78 (2), 270-277, 2019
1212019
The single-cell eQTLGen consortium
MGP van der Wijst, DH de Vries, HE Groot, G Trynka, CC Hon, MJ Bonder, ...
Elife 9, 2020
1142020
Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy
HEKBPFL Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram ...
Scientific Reports 7 (1), 12575, 2017
1112017
High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity
NL de Vries, V Van Unen, ME Ijsselsteijn, T Abdelaal, R Van Der Breggen, ...
Gut 69 (4), 691-703, 2020
852020
Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings
A Mahfouz, M van de Giessen, L van der Maaten, S Huisman, M Reinders, ...
Methods 73, 79–89, 2014
712014
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 463, 2021
702021
Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions
A Mahfouz, BPF Lelieveldt, A Grefhorst, LTCM van Weert, IM Mol, ...
Proceedings of the National Academy of Sciences 113 (10), 2738-2743, 2016
692016
NeuroD factors discriminate mineralocorticoid from glucocorticoid receptor DNA binding in the male rat brain
L van Weert, JC Buurstede, A Mahfouz, PSM Braakhuis, JAE Polman, ...
Endocrinology, 2017
642017
SpaGE: Spatial Gene Enhancement using scRNA-seq
T Abdelaal, S Mourragui, A Mahfouz, MJT Reinders
Nucleic acids research 48 (18), e107-e107, 2020
542020
Shared pathways among autism candidate genes determined by co-expression network analysis of the developing human brain transcriptome
A Mahfouz, MN Ziats, OM Rennert, BPF Lelieveldt, MJT Reinders
Journal of Molecular Neuroscience 57, 580-594, 2015
522015
Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
A Keo, A Mahfouz, AMT Ingrassia, JP Meneboo, C Villenet, E Mutez, ...
Communications Biology 3 (1), 1-12, 2020
512020
Hi-C chromatin interaction networks predict co-expression in the mouse cortex
S Babaei, A Mahfouz, M Hulsman, BPF Lelieveldt, J de Ridder, ...
PLoS computational biology 11 (5), e1004221, 2015
492015
Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas
E Eising, SMH Huisman, A Mahfouz, LS Vijfhuizen, V Anttila, BS Winsvold, ...
Human genetics 135, 425-439, 2016
482016
Ultrafast localization of the optic disc using dimensionality reduction of the search space
A Mahfouz, A Fahmy
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2009, 985-992, 2009
422009
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies
NL de Vries, A Mahfouz, F Koning, NFCC de Miranda
Frontiers in Oncology 10, 1254, 2020
402020
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