Ahmed Mahfouz
Ahmed Mahfouz
Associate Professor, Leiden University Medical Center
Verified email at - Homepage
Cited by
Cited by
Conserved cell types with divergent features in human versus mouse cortex
RD Hodge, TE Bakken, JA Miller, KA Smith, ER Barkan, LT Graybuck, ...
Nature 573 (7772), 61-68, 2019
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
A comparison of automatic cell identification methods for single-cell RNA sequencing data
T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, MJT Reinders, ...
Genome biology 20, 1-19, 2019
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
I Gupta, PG Collier, B Haase, A Mahfouz, A Joglekar, T Floyd, ...
Nature biotechnology 36 (12), 1197-1202, 2018
Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy
HEKBPFL Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram ...
Scientific Reports 7 (1), 12575, 2017
Fast localization of the optic disc using projection of image features
AE Mahfouz, AS Fahmy
IEEE Transactions on Image Processing 19 (12), 3285-3289, 2010
The single-cell eQTLGen consortium
MGP van der Wijst, DH de Vries, HE Groot, G Trynka, CC Hon, MJ Bonder, ...
Elife 9, 2020
RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage
RC de Almeida, YFM Ramos, A Mahfouz, W den Hollander, N Lakenberg, ...
Annals of the rheumatic diseases 78 (2), 270-277, 2019
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 463, 2021
High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity
NL de Vries, V Van Unen, ME Ijsselsteijn, T Abdelaal, R Van Der Breggen, ...
Gut 69 (4), 691-703, 2020
SpaGE: Spatial Gene Enhancement using scRNA-seq
T Abdelaal, S Mourragui, A Mahfouz, MJT Reinders
Nucleic acids research 48 (18), e107-e107, 2020
NeuroD factors discriminate mineralocorticoid from glucocorticoid receptor DNA binding in the male rat brain
L van Weert, JC Buurstede, A Mahfouz, PSM Braakhuis, JAE Polman, ...
Endocrinology, 2017
Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions
A Mahfouz, BPF Lelieveldt, A Grefhorst, LTCM van Weert, IM Mol, ...
Proceedings of the National Academy of Sciences 113 (10), 2738-2743, 2016
Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings
A Mahfouz, M van de Giessen, L van der Maaten, S Huisman, M Reinders, ...
Methods 73, 79–89, 2014
Analyzing cell-type-specific dynamics of metabolism in kidney repair
G Wang, B Heijs, S Kostidis, A Mahfouz, RGJ Rietjens, R Bijkerk, ...
Nature Metabolism 4 (9), 1109-1118, 2022
Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
A Keo, A Mahfouz, AMT Ingrassia, JP Meneboo, C Villenet, E Mutez, ...
Communications Biology 3 (1), 1-12, 2020
Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas
E Eising, SMH Huisman, A Mahfouz, LS Vijfhuizen, V Anttila, BS Winsvold, ...
Human genetics 135, 425-439, 2016
Hi-C chromatin interaction networks predict co-expression in the mouse cortex
S Babaei, A Mahfouz, M Hulsman, BPF Lelieveldt, J de Ridder, ...
PLoS computational biology 11 (5), e1004221, 2015
Shared pathways among autism candidate genes determined by co-expression network analysis of the developing human brain transcriptome
A Mahfouz, MN Ziats, OM Rennert, BPF Lelieveldt, MJT Reinders
Journal of Molecular Neuroscience 57, 580-594, 2015
Corticosteroid action in the brain: the potential of selective receptor modulation
EMG Viho, JC Buurstede, A Mahfouz, LL Koorneef, LTCM Van Weert, ...
Neuroendocrinology 109 (3), 266-276, 2019
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