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Hongfang Liu
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CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ...
Cancer research 72 (14), 3499-3511, 2012
7382012
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
7272018
Overview of BioCreative II gene mention recognition
L Smith, LK Tanabe, RJ Ando, CJ Kuo, IF Chung, CN Hsu, YS Lin, ...
Genome biology 9, 1-19, 2008
5032008
Overview of BioCreative II gene normalization
AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ...
Genome biology 9, 1-19, 2008
4062008
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
3922018
CLAMP–a toolkit for efficiently building customized clinical natural language processing pipelines
E Soysal, J Wang, M Jiang, Y Wu, S Pakhomov, H Liu, H Xu
Journal of the American Medical Informatics Association 25 (3), 331-336, 2018
3682018
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
3152015
Building effective defect-prediction models in practice
AG Koru, H Liu
IEEE software 22 (6), 23-29, 2005
2472005
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality
H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ...
Journal of the American Medical Informatics Association 22 (1), 179-191, 2015
2412015
Gene name ambiguity of eukaryotic nomenclatures
L Chen, H Liu, C Friedman
Bioinformatics 21 (2), 248-256, 2005
1972005
An investigation into the functional form of the size-defect relationship for software modules
AG Koru, D Zhang, K El Emam, H Liu
IEEE Transactions on Software Engineering 35 (2), 293-304, 2008
1942008
Artificial intelligence approaches using natural language processing to advance EHR-based clinical research
Y Juhn, H Liu
Journal of Allergy and Clinical Immunology 145 (2), 463-469, 2020
1932020
A clinical text classification paradigm using weak supervision and deep representation
Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu
BMC medical informatics and decision making 19, 1-13, 2019
1872019
Deep learning and alternative learning strategies for retrospective real-world clinical data
D Chen, S Liu, P Kingsbury, S Sohn, CB Storlie, EB Habermann, ...
NPJ digital medicine 2 (1), 43, 2019
1852019
An information extraction framework for cohort identification using electronic health records
H Liu, SJ Bielinski, S Sohn, S Murphy, KB Wagholikar, SR Jonnalagadda, ...
AMIA Summits on Translational Science Proceedings 2013, 149, 2013
1792013
Clinical characterization and prediction of clinical severity of SARS-CoV-2 infection among US adults using data from the US National COVID Cohort Collaborative
TD Bennett, RA Moffitt, JG Hajagos, B Amor, A Anand, MM Bissell, ...
JAMA network open 4 (7), e2116901-e2116901, 2021
1742021
Representing information in patient reports using natural language processing and the extensible markup language
C Friedman, G Hripcsak, L Shagina, H Liu
Journal of the American Medical Informatics Association 6 (1), 76-87, 1999
1691999
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS
H Liu, SB Johnson, C Friedman
Journal of the American Medical Informatics Association 9 (6), 621-636, 2002
1682002
The gene normalization task in BioCreative III
Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ...
BMC bioinformatics 12, 1-19, 2011
1662011
Characterizing long COVID: deep phenotype of a complex condition
RR Deer, MA Rock, N Vasilevsky, L Carmody, H Rando, AJ Anzalone, ...
EBioMedicine 74, 2021
1642021
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