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Rex R Malmstrom
Rex R Malmstrom
Staff Scientist / Director Microscale Applications Research Group; DOE Joint Genome Institute
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
10432017
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ...
Science 344 (6182), 416-420, 2014
5252014
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
J McCarren, JW Becker, DJ Repeta, Y Shi, CR Young, RR Malmstrom, ...
Proceedings of the National Academy of Sciences 107 (38), 16420-16427, 2010
3942010
Whole genome amplification and de novo assembly of single bacterial cells
S Rodrigue, RR Malmstrom, AM Berlin, BW Birren, MR Henn, ...
PloS one 4 (9), e6864, 2009
3502009
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
2872019
The epigenomic landscape of prokaryotes
MJ Blow, TA Clark, CG Daum, AM Deutschbauer, A Fomenkov, R Fries, ...
PLoS genetics 12 (2), e1005854, 2016
2792016
Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
RR Malmstrom, RP Kiene, MT Cottrell, DL Kirchman
Applied and Environmental Microbiology 70 (7), 4129-4135, 2004
2562004
Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ...
Nature protocols 9 (5), 1038-1048, 2014
2542014
Biogeography of major bacterial groups in the Delaware Estuary
DL Kirchman, AI Dittel, RR Malmstrom, MT Cottrell
Limnology and oceanography 50 (5), 1697-1706, 2005
2302005
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
RR Malmstrom, A Coe, GC Kettler, AC Martiny, J Frias-Lopez, ER Zinser, ...
The ISME journal 4 (10), 1252-1264, 2010
2222010
Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean
DL Kirchman, H Elifantz, AI Dittel, RR Malmstrom, MT Cottrell
Limnology and Oceanography 52 (2), 495-507, 2007
2082007
Unlocking short read sequencing for metagenomics
S Rodrigue, AC Materna, SC Timberlake, MC Blackburn, RR Malmstrom, ...
PloS one 5 (7), e11840, 2010
1962010
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ...
The ISME journal 10 (7), 1589-1601, 2016
1952016
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ...
Nature microbiology 3 (3), 328-336, 2018
1842018
Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean
RR Malmstrom, MT Cottrell, H Elifantz, DL Kirchman
Applied and environmental microbiology 71 (6), 2979-2986, 2005
1732005
Decontamination of MDA reagents for single cell whole genome amplification
T Woyke, A Sczyrba, J Lee, C Rinke, D Tighe, S Clingenpeel, ...
PloS one 6 (10), e26161, 2011
1612011
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia
R Hatzenpichler, SA Connon, D Goudeau, RR Malmstrom, T Woyke, ...
Proceedings of the National Academy of Sciences 113 (28), E4069-E4078, 2016
1522016
Control of bacterial growth by temperature and organic matter in the Western Arctic
DL Kirchman, RR Malmstrom, MT Cottrell
Deep Sea Research Part II: Topical Studies in Oceanography 52 (24-26), 3386-3395, 2005
1492005
Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico
RR Malmstrom, RP Kiene, DL Kirchman
Limnology and oceanography 49 (2), 597-606, 2004
1482004
Genome-wide identification of bacterial plant colonization genes
BJ Cole, ME Feltcher, RJ Waters, KM Wetmore, TS Mucyn, EM Ryan, ...
PLoS Biol 15 (9), e2002860, 2017
1452017
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