| B cell–helper neutrophils stimulate the diversification and production of immunoglobulin in the marginal zone of the spleen I Puga, M Cols, CM Barra, B He, L Cassis, M Gentile, L Comerma, ... Nature immunology 13 (2), 170-180, 2012 | 827 | 2012 |
| Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data B Reynisson, C Barra, S Kaabinejadian, WH Hildebrand, B Peters, ... Journal of proteome research 19 (6), 2304-2315, 2020 | 311 | 2020 |
| Innate lymphoid cells integrate stromal and immunological signals to enhance antibody production by splenic marginal zone B cells G Magri, M Miyajima, S Bascones, A Mortha, I Puga, L Cassis, CM Barra, ... Nature immunology 15 (4), 354-364, 2014 | 309 | 2014 |
| Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Nature communications 7 (1), 12846, 2016 | 252 | 2016 |
| Stromal endothelial cells establish a bidirectional crosstalk with chronic lymphocytic leukemia cells through the TNF-related factors BAFF, APRIL, and CD40L M Cols, CM Barra, B He, I Puga, W Xu, A Chiu, W Tam, DM Knowles, ... The Journal of Immunology 188 (12), 6071-6083, 2012 | 120 | 2012 |
| An analysis of natural T cell responses to predicted tumor neoepitopes AM Bjerregaard, M Nielsen, V Jurtz, CM Barra, SR Hadrup, Z Szallasi, ... Frontiers in immunology 8, 304925, 2017 | 102 | 2017 |
| NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T-cell epitope predictions B Alvarez, B Reynisson, C Barra, S Buus, N Ternette, T Connelley, ... Molecular & Cellular Proteomics 18 (12), 2459-2477, 2019 | 100 | 2019 |
| Footprints of antigen processing boost MHC class II natural ligand predictions C Barra, B Alvarez, S Paul, A Sette, B Peters, M Andreatta, S Buus, ... Genome medicine 10, 1-15, 2018 | 75 | 2018 |
| Regulation of mucosal IgA responses: lessons from primary immunodeficiencies A Cerutti, M Cols, M Gentile, L Cassis, CM Barra, B He, I Puga, K Chen Annals of the New York Academy of Sciences 1238 (1), 132-144, 2011 | 71 | 2011 |
| Computational tools for the identification and interpretation of sequence motifs in immunopeptidomes B Alvarez, C Barra, M Nielsen, M Andreatta Proteomics 18 (12), 1700252, 2018 | 53 | 2018 |
| Galacto-configured aminocyclitol phytoceramides are potent in vivo invariant natural killer T cell stimulators Y Harrak, CM Barra, A Delgado, AR Castaño, A Llebaria Journal of the American Chemical Society 133 (31), 12079-12084, 2011 | 49 | 2011 |
| Accurate MHC motif deconvolution of immunopeptidomics data reveals a significant contribution of DRB3, 4 and 5 to the total DR immunopeptidome S Kaabinejadian, C Barra, B Alvarez, H Yari, WH Hildebrand, M Nielsen Frontiers in Immunology 13, 835454, 2022 | 33 | 2022 |
| Structural and functional characterization of a novel nonglycosidic type I NKT agonist with immunomodulatory properties J Kerzerho, ED Yu, CM Barra, E Alari-Pahisa, E Girardi, Y Harrak, ... The Journal of Immunology 188 (5), 2254-2265, 2012 | 32 | 2012 |
| Aminocyclitol-substituted phytoceramides and their effects on iNKT cell stimulation Y Harrak, CM Barra, C Bedia, A Delgado, AR Castaño, A Llebaria ChemMedChem 4 (10), 1608-1613, 2009 | 27 | 2009 |
| Immunopeptidomic data integration to artificial neural networks enhances protein-drug immunogenicity prediction C Barra, C Ackaert, B Reynisson, J Schockaert, LE Jessen, M Watson, ... Frontiers in Immunology 11, 1304, 2020 | 19 | 2020 |
| B–helper neutrophils stimulate immunoglobulin diversification and production in the marginal zone of the spleen I Puga, M Cols, CM Barra, B He, L Cassis, M Gentile, L Comerma, ... Nature immunology 13 (2), 170, 2012 | 14 | 2012 |
| Machine learning reveals limited contribution of trans-only encoded variants to the HLA-DQ immunopeptidome JB Nilsson, S Kaabinejadian, H Yari, B Peters, C Barra, L Gragert, ... Communications biology 6 (1), 442, 2023 | 10 | 2023 |
| Improved prediction of HLA antigen presentation hotspots: Applications for immunogenicity risk assessment of therapeutic proteins AS Attermann, C Barra, B Reynisson, HS Schultz, U Leurs, K Lamberth, ... Immunology 162 (2), 208-219, 2021 | 10 | 2021 |
| NetMHCphosPan-pan-specific prediction of MHC class I antigen presentation of phosphorylated ligands CT Refsgaard, C Barra, X Peng, N Ternette, M Nielsen ImmunoInformatics 1, 100005, 2021 | 6 | 2021 |
| The interdependence of machine learning and LC-MS approaches for an unbiased understanding of the cellular immunopeptidome M Nielsen, N Ternette, C Barra Expert Review of Proteomics 19 (2), 77-88, 2022 | 4 | 2022 |
Morten NielsenDepartment of Health Technology, The Technical University ofVerified email at cbs.dtu.dk
