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Lily C. Hughes
Lily C. Hughes
NC Museum of Natural Sciences | NC State University
Verified email at naturalsciences.org - Homepage
Title
Cited by
Cited by
Year
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
LC Hughes, G Ortí, Y Huang, Y Sun, CC Baldwin, AW Thompson, D Arcila, ...
Proceedings of the National Academy of Sciences 115 (24), 6249-6254, 2018
5132018
Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes
R Betancur-R, D Arcila, RP Vari, LC Hughes, C Oliveira, MH Sabaj, G Ortí
Evolution 73 (2), 329-345, 2019
992019
Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria)
D Campanella, LC Hughes, PJ Unmack, DD Bloom, KR Piller, G Ortí
Molecular phylogenetics and evolution 86, 8-23, 2015
822015
Phylogenomics of piranhas and pacus (Serrasalmidae) uncovers how dietary convergence and parallelism obfuscate traditional morphological taxonomy
MA Kolmann, LC Hughes, LP Hernandez, D Arcila, R Betancur-R, ...
Systematic Biology 70 (3), 576-592, 2021
402021
Evolutionary determinism and convergence associated with water-column transitions in marine fishes
M Rincon-Sandoval, E Duarte-Ribeiro, AM Davis, A Santaquiteria, ...
Proceedings of the National Academy of Sciences 117 (52), 33396-33403, 2020
372020
Biogeography, habitat transitions and hybridization in a radiation of South American silverside fishes revealed by mitochondrial and genomic RAD data
LC Hughes, YP Cardoso, JA Sommer, R Cifuentes, M Cuello, ...
Molecular Ecology 29 (4), 738-751, 2020
342020
Kisspeptin system in pejerrey fish (Odontesthes bonariensis). Characterization and gene expression pattern during early developmental stages
MOT Bohórquez, AS Mechaly, LC Hughes, D Campanella, G Ortí, ...
Comparative Biochemistry and Physiology Part A: Molecular & Integrative …, 2017
302017
Transcriptomic differentiation underlying marine‐to‐freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes)
LC Hughes, GM Somoza, BN Nguyen, JP Bernot, M González‐Castro, ...
Ecology and evolution 7 (14), 5258-5268, 2017
292017
Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics
LC Hughes, G Ortí, H Saad, C Li, WT White, CC Baldwin, KA Crandall, ...
Molecular Ecology Resources 21 (3), 816-833, 2021
24*2021
Testing the utility of alternative metrics of branch support to address the ancient evolutionary radiation of tunas, stromateoids, and allies (Teleostei: Pelagiaria)
D Arcila, LC Hughes, B Meléndez-Vazquez, CC Baldwin, WT White, ...
Systematic Biology 70 (6), 1123-1144, 2021
232021
The impact of paleoclimatic changes on body size evolution in marine fishes
EM Troyer, R Betancur-R, LC Hughes, M Westneat, G Carnevale, ...
Proceedings of the National Academy of Sciences 119 (29), e2122486119, 2022
202022
Phylogenomics of Bony-Tongue Fishes (Osteoglossomorpha) Shed Light on the Craniofacial Evolution and Biogeography of the Weakly Electric Clade (Mormyridae)
RD Peterson, JP Sullivan, CD Hopkins, A Santaquiteria, CB Dillman, ...
Systematic Biology 71 (5), 1032–1044, 2022
192022
Concordance and discordance in the phylogenomics of the wrasses and parrotfishes (Teleostei: Labridae)
LC Hughes, CM Nash, WT White, MW Westneat
Systematic Biology 72 (3), 530-543, 2023
182023
Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei)
CJ Atta, H Yuan, C Li, D Arcila, R Betancur-R, LC Hughes, G Ortí, ...
Molecular Phylogenetics and Evolution 166, 107315, 2022
102022
Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae)
CM Nash, LL Lungstrom, LC Hughes, MW Westneat
Molecular Phylogenetics and Evolution 177, 107616, 2022
62022
Can ecotypic differences in male courtship behaviour be explained by visual cues provided by female threespine stickleback?
LC Hughes, SA Foster, JA Baker
Evolutionary Ecology Research 15 (4), 437-451, 2013
62013
Hybridization is strongly constrained by salinity during secondary contact between silverside fishes (Odontesthes, Atheriniformes)
M González-Castro, YP Cardoso, LC Hughes, G Ortí
Heredity 129 (4), 233-243, 2022
22022
Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry
E Duarte-Ribeiro, U Rosas-Puchuri, M Friedman, GC Woodruff, ...
Nature genetics, 1-4, 2024
2024
Phylogenomics of piranhas and pacus (Serrasalmidae) uncovers how convergent diets obfuscate traditional morphological taxonomy
MA Kolmann, LC Hughes, LP Hernandez, D Arcila, R Betancur, MH Sabaj, ...
bioRxiv. org, 2020
2020
Tackling Evolutionary Questions in Fishes with Genome-Wide Data from Recent Speciation to Ancient Divergences
LC Hughes
The George Washington University, 2018
2018
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Articles 1–20