|A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation|
S Ke, EA Alemu, C Mertens, EC Gantman, JJ Fak, A Mele, B Haripal, ...
Genes & development 29 (19), 2037-2053, 2015
|miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity|
MJ Moore, TKH Scheel, JM Luna, CY Park, JJ Fak, E Nishiuchi, CM Rice, ...
Nature communications 6 (1), 8864, 2015
|Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk|
J Zhou*, CY Park*, CL Theesfeld*, AK Wong, Y Yuan, C Scheckel, JJ Fak, ...
Nature genetics 51 (6), 973-980, 2019
|Rapid and accurate peptide identification from tandem mass spectra|
CY Park, AA Klammer, L Kall, MJ MacCoss, WS Noble
Journal of proteome research 7 (7), 3022-3027, 2008
|Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain|
C Scheckel, E Drapeau, MA Frias, CY Park, J Fak, I Zucker-Scharff, Y Kou, ...
Elife 5, e10421, 2016
|ZFP36 RNA-binding proteins restrain T cell activation and anti-viral immunity|
MJ Moore, NE Blachere, JJ Fak, CY Park, K Sawicka, S Parveen, ...
Elife 7, e33057, 2018
|IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks|
AK Wong, CY Park, CS Greene, LA Bongo, Y Guan, OG Troyanskaya
Nucleic acids research 40 (W1), W484-W490, 2012
|NOVA2-mediated RNA regulation is required for axonal pathfinding during development|
Y Saito, S Miranda-Rottmann, M Ruggiu, CY Park, JJ Fak, R Zhong, ...
Elife 5, e14371, 2016
|FMRP has a cell-type-specific role in CA1 pyramidal neurons to regulate autism-related transcripts and circadian memory|
K Sawicka, CR Hale, CY Park, JJ Fak, JE Gresack, SJ Van Driesche, ...
Elife 8, e46919, 2019
|Functional knowledge transfer for high-accuracy prediction of under-studied biological processes|
CY Park, AK Wong, CS Greene, J Rowland, Y Guan, LA Bongo, ...
PLoS computational biology 9 (3), e1002957, 2013
|PAPERCLIP identifies microRNA targets and a role of CstF64/64tau in promoting non-canonical poly (A) site usage|
HW Hwang, CY Park, H Goodarzi, JJ Fak, A Mele, MJ Moore, Y Saito, ...
Cell reports 15 (2), 423-435, 2016
|Statistical calibration of the SEQUEST XCorr function|
AA Klammer, CY Park, WS Noble
Journal of proteome research 8 (4), 2106-2113, 2009
|Interactive big data resource to elucidate human immune pathways and diseases|
D Gorenshteyn, E Zaslavsky, M Fribourg, CY Park, AK Wong, A Tadych, ...
Immunity 43 (3), 605-614, 2015
|cTag-PAPERCLIP reveals alternative polyadenylation promotes cell-type specific protein diversity and shifts Araf isoforms with microglia activation|
HW Hwang, Y Saito, CY Park, NE Blachère, Y Tajima, JJ Fak, ...
Neuron 95 (6), 1334-1349. e5, 2017
|Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate|
C Iserman, C Roden, M Boerneke, R Sealfon, G McLaughlin, I Jungreis, ...
|Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk|
CY Park, J Zhou, AK Wong, KM Chen, CL Theesfeld, RB Darnell, ...
Nature genetics 53 (2), 166-173, 2021
|Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms|
CY Park, A Krishnan, Q Zhu, AK Wong, YS Lee, OG Troyanskaya
Bioinformatics 31 (7), 1093-1101, 2015
|An automated framework for efficiently designing deep convolutional neural networks in genomics|
Z Zhang, CY Park, CL Theesfeld, OG Troyanskaya
Nature Machine Intelligence 3 (5), 392-400, 2021
|Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components|
CY Park, DC Hess, C Huttenhower, OG Troyanskaya
PLoS computational biology 6 (11), e1001009, 2010
|Tissue-specific enhancer functional networks for associating distal regulatory regions to disease|
X Chen, J Zhou, R Zhang, AK Wong, CY Park, CL Theesfeld, ...
Cell systems 12 (4), 353-362. e6, 2021