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Santiago J. Carmona
Santiago J. Carmona
Ludwig Institute for Cancer Research, University of Lausanne & Swiss Institute of Bioinformatics
Verified email at unil.ch - Homepage
Title
Cited by
Cited by
Year
Intratumoral Tcf1+ PD-1+ CD8+ T cells with stem-like properties promote tumor control in response to vaccination and checkpoint blockade immunotherapy
I Siddiqui, K Schaeuble, V Chennupati, SAF Marraco, S Calderon-Copete, ...
Immunity 50 (1), 195-211. e10, 2019
10392019
Genomic-scale prioritization of drug targets: the TDR Targets database
F Agüero, B Al-Lazikani, M Aslett, M Berriman, FS Buckner, RK Campbell, ...
Nature reviews Drug discovery 7 (11), 900-907, 2008
3552008
UCell: Robust and scalable single-cell gene signature scoring
M Andreatta, SJ Carmona
Computational and structural biotechnology journal 19, 3796-3798, 2021
2422021
Interpretation of T cell states from single-cell transcriptomics data using reference atlases
M Andreatta, J Corria-Osorio, S Müller, R Cubas, G Coukos, SJ Carmona
Nature communications 12 (1), 2965, 2021
2362021
Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach
GJ Crowther, D Shanmugam, SJ Carmona, MA Doyle, C Hertz-Fowler, ...
PLoS neglected tropical diseases 4 (8), e804, 2010
1912010
Low-dose radiotherapy reverses tumor immune desertification and resistance to immunotherapy
FG Herrera, C Ronet, M Ochoa de Olza, D Barras, I Crespo, M Andreatta, ...
Cancer discovery 12 (1), 108-133, 2022
1902022
TDR Targets: a chemogenomics resource for neglected diseases
MP Magariños, SJ Carmona, GJ Crowther, SA Ralph, DS Roos, ...
Nucleic acids research 40 (D1), D1118-D1127, 2012
1522012
Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types
SJ Carmona, SA Teichmann, L Ferreira, IC Macaulay, MJT Stubbington, ...
Genome Research 27 (3), 451-461, 2017
1032017
Towards high-throughput immunomics for infectious diseases: use of next-generation peptide microarrays for rapid discovery and mapping of antigenic determinants
SJ Carmona, M Nielsen, C Schafer-Nielsen, J Mucci, J Altcheh, V Balouz, ...
Molecular & Cellular Proteomics, M114. 045906, 2015
982015
Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting
J Schmidt, AR Smith, M Magnin, J Racle, JR Devlin, S Bobisse, J Cesbron, ...
Cell Reports Medicine 2 (2), 2021
932021
Myeloid antigen-presenting cell niches sustain antitumor T cells and license PD-1 blockade via CD28 costimulation
J Duraiswamy, R Turrini, A Minasyan, D Barras, I Crespo, AJ Grimm, ...
Cancer Cell 39 (12), 1623-1642. e20, 2021
762021
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
J Biermann, JC Melms, AD Amin, Y Wang, LA Caprio, A Karz, S Tagore, ...
Cell 185 (14), 2591-2608. e30, 2022
592022
Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq
SJ Carmona*, I Siddiqui, M Bilous, W Held, D Gfeller*
OncoImmunology 9 (1), 1737369 (*corresponding), 2020
472020
Diagnostic peptide discovery: prioritization of pathogen diagnostic markers using multiple features
SJ Carmona, PA Sartor, MS Leguizamón, OE Campetella, F Agüero
PLOS One 7 (12), e50748, 2012
472012
Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes
JG De Gaudenzi, SJ Carmona, F Agüero, AC Frasch
PeerJ 1, e118, 2013
452013
Next-generation ELISA diagnostic assay for Chagas Disease based on the combination of short peptidic epitopes
J Mucci*, SJ Carmona*, R Volcovich, J Altcheh, E Bracamonte, JD Marco
PLoS Negl Trop Dis 11 (10), e0005972 (*joint first authors), 2017
442017
Mapping antigenic motifs in the trypomastigote small surface antigen from Trypanosoma cruzi
V Balouz, MM Camara, GE Cánepa, SJ Carmona, R Volcovich, ...
Clinical and vaccine immunology 22 (3), 304-312, 2015
422015
STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data
M Andreatta, SJ Carmona
Bioinformatics 37 (6), 882-884, 2021
302021
scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets
M Andreatta, AJ Berenstein, SJ Carmona
Bioinformatics 38 (9), 2642-2644, 2022
282022
High-resolution profiling of linear B-cell epitopes from mucin-associated surface proteins (MASPs) of Trypanosoma cruzi during human infections
IM Durante, PE La Spina, SJ Carmona, F Agüero, CA Buscaglia
PLoS neglected tropical diseases 11 (9), e0005986, 2017
282017
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Articles 1–20