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Samuel A Assefa
Samuel A Assefa
U.S. Bank; University of Cambridge; LSHTM
Verified email at usbank.com
Title
Cited by
Cited by
Year
ABACAS: algorithm-based automatic contiguation of assembled sequences
S Assefa, TM Keane, TD Otto, C Newbold, M Berriman
Bioinformatics 25 (15), 1968-1969, 2009
5212009
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ...
Molecular microbiology 76 (1), 12-24, 2010
4432010
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
4412011
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi
TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ...
PLoS genetics 5 (7), e1000569, 2009
2832009
Generating synthetic data in finance: opportunities, challenges and pitfalls
SA Assefa, D Dervovic, M Mahfouz, RE Tillman, P Reddy, M Veloso
Proceedings of the First ACM International Conference on AI in Finance, 1-8, 2020
1492020
A simple method for directional transcriptome sequencing using Illumina technology
NJ Croucher, MC Fookes, TT Perkins, DJ Turner, SB Marguerat, T Keane, ...
Nucleic acids research 37 (22), e148-e148, 2009
1322009
A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains
MD Preston, S Campino, SA Assefa, DF Echeverry, H Ocholla, ...
Nature communications 5 (1), 4052, 2014
1312014
Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi
S Assefa, C Lim, MD Preston, CW Duffy, MB Nair, SA Adroub, KA Kadir, ...
Proceedings of the National Academy of Sciences 112 (42), 13027-13032, 2015
1002015
Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species
PCS Divis, B Singh, F Anderios, S Hisam, A Matusop, CH Kocken, ...
PLoS Pathogens 11 (5), e1004888, 2015
922015
Simulation intelligence: Towards a new generation of scientific methods
A Lavin, D Krakauer, H Zenil, J Gottschlich, T Mattson, J Brehmer, ...
arXiv preprint arXiv:2112.03235, 2021
912021
Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing
TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ...
PloS one 8 (12), e83012, 2013
912013
Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya
S Borrmann, J Straimer, L Mwai, A Abdi, A Rippert, J Okombo, S Muriithi, ...
Scientific reports 3 (1), 3318, 2013
802013
Culture adaptation of malaria parasites selects for convergent loss-of-function mutants
A Claessens, M Affara, SA Assefa, DP Kwiatkowski, DJ Conway
Scientific reports 7 (1), 41303, 2017
732017
estMOI: estimating multiplicity of infection using parasite deep sequencing data
SA Assefa, MD Preston, S Campino, H Ocholla, CJ Sutherland, TG Clark
Bioinformatics 30 (9), 1292-1294, 2014
722014
Evolutionary analysis of the most polymorphic gene family in falciparum malaria
TD Otto, SA Assefa, U Böhme, MJ Sanders, D Kwiatkowski, M Berriman, ...
Wellcome Open Research 4, 2019
602019
Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients
T Robinson, SG Campino, S Auburn, SA Assefa, SD Polley, M Manske, ...
PloS one 6 (8), e23204, 2011
582011
Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates
H Ocholla, MD Preston, M Mipando, ATR Jensen, S Campino, B MacInnis, ...
The Journal of infectious diseases 210 (12), 1991-2000, 2014
572014
Copula flows for synthetic data generation
S Kamthe, S Assefa, M Deisenroth
arXiv preprint arXiv:2101.00598, 2021
432021
Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity
CW Duffy, SA Assefa, J Abugri, N Amoako, S Owusu-Agyei, T Anyorigiya, ...
BMC genomics 16, 1-11, 2015
402015
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution
CW Duffy, H Ba, S Assefa, AD Ahouidi, YB Deh, A Tandia, FCM Kirsebom, ...
Molecular ecology 26 (11), 2880-2894, 2017
322017
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Articles 1–20