| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 296 | 2019 |
| The effects of death and post-mortem cold ischemia on human tissue transcriptomes PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ... Nature communications 9 (1), 490, 2018 | 278 | 2018 |
| Babelomics 5.0: functional interpretation for new generations of genomic data R Alonso, F Salavert, F Garcia-Garcia, J Carbonell-Caballero, M Bleda, ... Nucleic acids research 43 (W1), W117-W121, 2015 | 140 | 2015 |
| Prediction of human population responses to toxic compounds by a collaborative competition F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ... Nature biotechnology 33 (9), 933, 2015 | 120 | 2015 |
| A Long Noncoding RNA Regulates Sister Chromatid Cohesion FP Marchese, E Grossi, O Marín-Béjar, SK Bharti, I Raimondi, J González, ... Molecular Cell, 2016 | 92 | 2016 |
| High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes MR Hidalgo, C Cubuk, A Amadoz, F Salavert, J Carbonell-Caballero, ... Oncotarget 8 (3), 5160, 2017 | 90 | 2017 |
| 267 Spanish exomes reveal population-specific differences in disease-related genetic variation J Dopazo, A Amadoz, M Bleda, L Garcia-Alonso, A Alemán, ... Molecular biology and evolution 33 (5), 1205-1218, 2016 | 86 | 2016 |
| Understanding disease mechanisms with models of signaling pathway activities P Sebastian-Leon, E Vidal, P Minguez, A Conesa, S Tarazona, A Amadoz, ... BMC Systems Biology 8, 121, 2014 | 61 | 2014 |
| A comparison of mechanistic signaling pathway activity analysis methods A Amadoz, MR Hidalgo, C Cubuk, J Carbonell-Caballero, J Dopazo Briefings in bioinformatics 20 (5), 1655-1668, 2019 | 50 | 2019 |
| Gene expression integration into pathway modules reveals a pan-cancer metabolic landscape C Cubuk, MR Hidalgo, A Amadoz, MA Pujana, F Mateo, C Herranz, ... Cancer research 78 (21), 6059-6072, 2018 | 48 | 2018 |
| Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity A Amadoz, P Sebastian-Leon, E Vidal, F Salavert, J Dopazo Scientific Reports 5, 18494, 2015 | 47 | 2015 |
| Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome MR Hidalgo, A Amadoz, C Çubuk, J Carbonell-Caballero, J Dopazo Biology direct 13, 1-12, 2018 | 35 | 2018 |
| Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments L García-Alonso, R Alonso, E Vidal, A Amadoz, A de Maria, P Minguez, ... Nucleic acids research 40 (20), e158-e158, 2012 | 35 | 2012 |
| Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models C Çubuk, MR Hidalgo, A Amadoz, K Rian, F Salavert, MA Pujana, ... NPJ Systems Biology and Applications 5 (1), 7, 2019 | 34 | 2019 |
| Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models F Salavert, MR Hidago, A Amadoz, C Cubuk, I Medina, D Crespo, ... Nucleic acids research 44 (W1), W212-W216, 2016 | 33 | 2016 |
| Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia T Garrido-Gomez, N Castillo-Marco, M Clemente-Ciscar, T Cordero, ... Elife 10, e70753, 2021 | 26 | 2021 |
| Community assessment of the predictability of cancer protein and phosphoprotein levels from genomics and transcriptomics M Yang, F Petralia, Z Li, H Li, W Ma, X Song, S Kim, H Lee, H Yu, B Lee, ... Cell systems 11 (2), 186-195. e9, 2020 | 24 | 2020 |
| The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nat Commun 9: 490 PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sá Godinho, A Sousa, ... | 17 | 2018 |
| A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection S Fourati, A Talla, M Mahmoudian, JG Burkhart, R Klén, R Henao, T Yu, ... Nature Communications 9 (1), 4418, 2018 | 16 | 2018 |
| epiPATH: an information system for the storage and management of molecular epidemiology data from infectious pathogens A Amadoz, F González-Candelas BMC infectious diseases 7 (1), 32, 2007 | 16 | 2007 |
Joaquin DopazoComputational Medicine Platform, FPS, Hospital Virgen del Rocio, Sevilla, SpainVerified email at juntadeandalucia.es
