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Caleb Geniesse
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MoleculeNet: a benchmark for molecular machine learning
Z Wu, B Ramsundar, EN Feinberg, J Gomes, C Geniesse, AS Pappu, ...
Chemical science 9 (2), 513-530, 2018
23692018
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5642020
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
1822017
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
Rna 26 (8), 982-995, 2020
1042020
Blind prediction of noncanonical RNA structure at atomic accuracy
AM Watkins, C Geniesse, W Kladwang, P Zakrevsky, L Jaeger, R Das
Science Advances 4 (5), eaar5316, 2018
472018
Generating dynamical neuroimaging spatiotemporal representations (DyNeuSR) using topological data analysis
C Geniesse, O Sporns, G Petri, M Saggar
Network neuroscience 3 (3), 763-778, 2019
462019
Aneesh S 484 Pappu, Karl Leswing, and Vijay Pande. Moleculenet: a benchmark for molecular machine 485 learning
Z Wu, B Ramsundar, EN Feinberg, J Gomes, C Geniesse
Chemical science 9 (2), 513-530, 2018
372018
Spontaneous and deliberate modes of creativity: Multitask eigen-connectivity analysis captures latent cognitive modes during creative thinking
H Xie, RE Beaty, S Jahanikia, C Geniesse, NS Sonalkar, M Saggar
NeuroImage 243, 118531, 2021
172021
NeuMapper: A scalable computational framework for multiscale exploration of the brain’s dynamical organization
C Geniesse, S Chowdhury, M Saggar
Network Neuroscience 6 (2), 467-498, 2022
92022
Synaptopodin stress fiber and contractomere at the epithelial junction
T Morris, E Sue, C Geniesse, WM Brieher, VW Tang
Journal of Cell Biology 221 (5), e202011162, 2022
52022
Mining the role of design reflection and associated brain dynamics in creativity
N Sonalkar, S Jahanikia, H Xie, C Geniesse, R Ayub, R Beaty, M Saggar
Design Thinking Research: Investigating Design Team Performance, 155-167, 2020
22020
Synaptopodin is required for stress fiber and contractomere assembly at the epithelial junction
T Morris, E Sue, C Geniesse, WM Brieher, VW Tang
bioRxiv, 2020.12. 30.424702, 2021
12021
A Data-Driven Latent Variable Approach to Validating the Research Domain Criteria Framework
SKL Quah, B Jo, C Geniesse, LQ Uddin, JA Mumford, DM Barch, DA Fair, ...
bioRxiv, 2024
2024
A Data-Driven Latent Variable Approach to Validating the Research Domain Criteria (RDoC) Framework
SKL Quah, B Jo, C Geniesse, LQ Uddin, JA Mumford, DM Barch, DA Fair, ...
bioRxiv, 2024.01. 31.577486, 2024
2024
Deconstructing the Mapper algorithm to extract richer topological and temporal features from functional neuroimaging data
D Hasegan, C Geniesse, S Chowdhury, M Saggar
bioRxiv, 2023
2023
Systems and Methods for Scalable Mapping of Brain Dynamics
M Saggar, S Chowdhury, C Geniesse
US Patent App. 18/045,772, 2023
2023
Capturing Brain Dynamics with Topological Data Analysis
C Geniesse
Stanford University, 2023
2023
NeuMapper: A scalable computational framework for multiscale exploration of the brain’s dynamical organization
C Geniesse, S Chowdhury, M Saggar
Network Neuroscience, 2022
2022
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