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Pengfei Yu
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Comparative Epigenomic Annotation of Regulatory DNA
S Xiao, D Xie, X Cao, P Yu, X Xing, CC Chen, M Musselman, M Xie, ...
Cell 149 (6), 1381-1392, 2012
2132012
Mapping RNA–RNA interactome and RNA structure in vivo by MARIO
TC Nguyen, X Cao, P Yu, S Xiao, J Lu, FH Biase, B Sridhar, N Huang, ...
Nature communications 7 (1), 12023, 2016
1532016
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
P Yu, S Xiao, X Xin, CX Song, W Huang, D McDee, T Tanaka, T Wang, ...
Genome Research, 2013
762013
Genomic analysis of hepatic farnesoid X receptor binding sites reveals altered binding in obesity and direct gene repression by farnesoid X receptor in mice
J Lee, S Seok, P Yu, K Kim, Z Smith, M Rivas‐Astroza, S Zhong, ...
Hepatology 56 (1), 108-117, 2012
702012
SMARCAD1 contributes to the regulation of naive pluripotency by interacting with histone citrullination
S Xiao, J Lu, B Sridhar, X Cao, P Yu, T Zhao, CC Chen, D McDee, ...
Cell reports 18 (13), 3117-3128, 2017
462017
Characterization of Lgr5+ progenitor cell transcriptomes after neomycin injury in the neonatal mouse cochlea
S Zhang, Y Zhang, P Yu, Y Hu, H Zhou, L Guo, X Xu, X Zhu, M Waqas, ...
Frontiers in Molecular Neuroscience 10, 213, 2017
342017
Time-variant clustering model for understanding cell fate decisions
W Huang, X Cao, FH Biase, P Yu, S Zhong
Proceedings of the National Academy of Sciences 111 (44), E4797-E4806, 2014
262014
GLITTER: a web-based application for gene link inspection through tissue-specific coexpression
X Liu, P Yu, C Cheng, JB Potash, S Han
Scientific reports 6 (1), 33460, 2016
32016
Mapping RNA-RNA interactome and RNA structure in vivo by MARIO. Nat. Commun. 7, 12023 (2016)
TC Nguyen, X Cao, P Yu, S Xiao, J Lu, FH Biase, B Sridhar, N Huang, ...
3
Mapping RNA-RNA interactome and RNA structure in vivo by MARIO. Nat Commun. 2016; 7: 12023
TC Nguyen, X Cao, P Yu, S Xiao, J Lu, FH Biase
3
Bioinformatic methods for analyses of epigenome and RNA interactome
P Yu
University of Illinois at Urbana-Champaign, 2014
2014
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Articles 1–11