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Remo Monti
Remo Monti
Hasso Plattner Institute, Berlin Institute for Medical Systems Biology
Verified email at mdc-berlin.de
Title
Cited by
Cited by
Year
The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis
J Wong-Bajracharya, VR Singan, R Monti, KL Plett, V Ng, IV Grigoriev, ...
Proceedings of the National Academy of Sciences 119 (3), e2103527119, 2022
912022
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
VW Wu, N Thieme, LB Huberman, A Dietschmann, DJ Kowbel, J Lee, ...
Proceedings of the National Academy of Sciences 117 (11), 6003-6013, 2020
852020
Contig: Self-supervised multimodal contrastive learning for medical imaging with genetics
A Taleb, M Kirchler, R Monti, C Lippert
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2022
722022
Deep learning for genomics using Janggu
W Kopp, R Monti, A Tamburrini, U Ohler, A Akalin
Nature communications 11 (1), 3488, 2020
662020
Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb
R Monti, I Barozzi, M Osterwalder, E Lee, M Kato, TH Garvin, ...
PLoS computational biology 13 (8), e1005720, 2017
252017
A switch in transcription and cell fate governs the onset of an epigenetically-deregulated tumor in Drosophila
J Torres, R Monti, AL Moore, M Seimiya, Y Jiang, N Beerenwinkel, ...
Elife 7, e32697, 2018
202018
A unified framework for estimating country-specific cumulative incidence for 18 diseases stratified by polygenic risk
B Jermy, K Läll, BN Wolford, Y Wang, K Zguro, Y Cheng, M Kanai, ...
Nature Communications 15 (1), 5007, 2024
162024
Evaluation of polygenic scoring methods in five biobanks shows larger variation between biobanks than methods and finds benefits of ensemble learning
R Monti, L Eick, G Hudjashov, K Läll, S Kanoni, BN Wolford, B Wingfield, ...
The American Journal of Human Genetics 111 (7), 1431-1447, 2024
132024
Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes
R Monti, P Rautenstrauch, M Ghanbari, AR James, M Kirchler, U Ohler, ...
Nature communications 13 (1), 5332, 2022
132022
HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes
S Wharrie, Z Yang, V Raj, R Monti, R Gupta, Y Wang, A Martin, ...
Bioinformatics 39 (9), btad535, 2023
122023
Toward identification of functional sequences and variants in noncoding DNA
R Monti, U Ohler
Annual Review of Biomedical Data Science 6 (1), 191-210, 2023
72023
HAPNEST: An efficient tool for generating large-scale genetics datasets from limited training data
S Wharrie, Z Yang, V Raj, R Monti, R Gupta, Y Wang, A Martin, ...
NeurIPS 2022 Workshop on Synthetic Data for Empowering ML Research, 2022
42022
Evaluation of polygenic scoring methods in five biobanks reveals greater variability between biobanks than between methods and highlights benefits of ensemble learning
R Monti, L Eick, G Hudjashov, K Läll, S Kanoni, BN Wolford, B Wingfield, ...
Medrxiv, 2023.11. 20.23298215, 2023
32023
Janggu-Deep learning for genomics
W Kopp, R Monti, A Tamburrini, U Ohler, A Akalin
BioRxiv, 700450, 2019
32019
Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastoma
M Burkert, E Blanc, N Thiessen, C Weber, J Toedling, R Monti, ...
bioRxiv, 2022.08. 16.504100, 2022
12022
Fast kernel-based rare-variant association tests integrating variant annotations from deep learning
S Konigorski, R Monti, P Rautenstrauch, C Lippert
GENETIC EPIDEMIOLOGY 44 (5), 495-495, 2020
12020
TransferGWAS of T1-weighted brain MRI data from UK Biobank
A Rakowski, R Monti, C Lippert
PLoS Genetics 20 (12), e1011332, 2024
2024
Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastoma
M Burkert, E Blanc, N Thiessen, C Weber, J Toedling, R Monti, ...
Iscience 27 (10), 2024
2024
Metadata-guided Feature Disentanglement for Functional Genomics
A Rakowski, R Monti, V Huryn, M Lemanczyk, U Ohler, C Lippert
arXiv preprint arXiv:2405.19057, 2024
2024
A fast method to generate hundreds of thousands of synthetic genomes and phenotypes
S Wharrie, Z Yang, V Raj, R Gupta, R Monti, Y Wang, PF Palamara, ...
European journal of human genetics 31 (Suppl. 1), 291-291, 2023
2023
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Articles 1–20