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Tamim Abdelaal
Tamim Abdelaal
Leiden University Medical Center
Verified email at lumc.nl
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Cited by
Cited by
Year
A comparison of automatic cell identification methods for single-cell RNA-sequencing data
T Abdelaal, L Michielsen, D Cats, D Hoogduin, H Mei, M Reinders, ...
Genome Biology 20 (1), 194, 2019
5172019
Memory CD4+ T cells are generated in the human fetal intestine
N Li, V van Unen, T Abdelaal, N Guo, SA Kasatskaya, K Ladell, ...
Nature immunology 20 (3), 301-312, 2019
1432019
SpaGE: Spatial Gene Enhancement using scRNA-seq
T Abdelaal, S Mourragui, A Mahfouz, MJT Reinders
Nucleic Acids Research 48 (18), e107, 2020
1402020
High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity
NL de Vries, V van Unen, ME Ijsselsteijn, T Abdelaal, R van der Breggen, ...
Gut, gutjnl-2019-318672, 2019
1242019
Predicting cell populations in single cell mass cytometry data
T Abdelaal, V van Unen, T Höllt, F Koning, MJT Reinders, A Mahfouz
Cytometry Part A 95 (7), 769-781, 2019
622019
A third vaccination with a single T cell epitope confers protection in a murine model of SARS-CoV-2 infection
IN Pardieck, TC van der Sluis, ETI van der Gracht, DMB Veerkamp, ...
Nature communications 13 (1), 3966, 2022
362022
CyTOFmerge: integrating mass cytometry data across multiple panels
T Abdelaal, T Höllt, V van Unen, BPF Lelieveldt, F Koning, MJT Reinders, ...
Bioinformatics 35 (20), 4063-4071, 2019
292019
Identification of a disease-associated network of intestinal immune cells in treatment-naive inflammatory bowel disease
V Unen, LF Ouboter, N Li, M Schreurs, T Abdelaal, Y Kooy-Winkelaar, ...
Frontiers in Immunology, 2802, 2022
172022
Early-life compartmentalization of immune cells in human fetal tissues revealed by high-dimensional mass cytometry
N Li, V Van Unen, N Guo, T Abdelaal, A Somarakis, J Eggermont, ...
Frontiers in Immunology 10, 1932, 2019
172019
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain
Y Zhang, JA Miller, J Park, BP Lelieveldt, B Long, T Abdelaal, ...
Scientific Reports 13 (1), 9567, 2023
14*2023
Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models
LGM Heezen, T Abdelaal, M van Putten, A Aartsma-Rus, A Mahfouz, ...
Nature Communications 14 (4909), 1-16, 2023
132023
SIRV: Spatial inference of RNA velocity at the single-cell resolution
T Abdelaal, LM Grossouw, RJ Pasterkamp, BPF Lelieveldt, MJT Reinders, ...
NAR genomics and bioinformatics 6 (3), 2024
102024
scMoC: single-cell multi-omics clustering
M Eltager, T Abdelaal, A Mahfouz, MJT Reinders
Bioinformatics Advances 2 (1), vbac011, 2022
102022
OX40 agonism enhances PD-L1 checkpoint blockade by shifting the cytotoxic T cell differentiation spectrum
TC van der Sluis, G Beyrend, ETI van der Gracht, T Abdelaal, SP Jochems, ...
Cell Reports Medicine 4 (3), 2023
9*2023
Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry
TP Brouwer, NL de Vries, T Abdelaal, RT Krog, Z Li, D Ruano, A Fariña, ...
Journal for Immunotherapy of Cancer 10 (7), 2022
92022
Phenotypic characterization by mass cytometry of the microenvironment in ovarian cancer and impact of tumor dissociation methods
S Anandan, LCV Thomsen, SE Gullaksen, T Abdelaal, K Kleinmanns, ...
Cancers 13 (4), 755, 2021
92021
Memory CD8+ T cell heterogeneity is primarily driven by pathogen-specific cues and additionally shaped by the tissue environment
ETI van der Gracht, G Beyrend, T Abdelaal, IN Pardieck, TH Wesselink, ...
Iscience 24 (1), 2021
82021
SCHNEL: scalable clustering of high dimensional single-cell data
T Abdelaal, P de Raadt, BPF Lelieveldt, MJT Reinders, A Mahfouz
Bioinformatics 36 (Supplement_2), i849–i856, 2020
72020
Benchmarking variational autoencoders on cancer transcriptomics data
M Eltager, T Abdelaal, M Charrout, A Mahfouz, MJT Reinders, ...
Plos one 18 (10), e0292126, 2023
42023
An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics
S Makrodimitris, B Pronk, T Abdelaal, M Reinders
Briefings in Bioinformatics 25 (1), bbad416, 2024
22024
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Articles 1–20