DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly I Scheinin, D Sie, H Bengtsson, MA Van De Wiel, AB Olshen, ... Genome research 24 (12), 2022-2032, 2014 | 430 | 2014 |
Chipster: user-friendly analysis software for microarray and other high-throughput data MA Kallio, JT Tuimala, T Hupponen, P Klemelä, M Gentile, I Scheinin, ... BMC genomics 12, 1-14, 2011 | 412 | 2011 |
Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes S Myllykangas, S Junnila, A Kokkola, R Autio, I Scheinin, T Kiviluoto, ... International journal of cancer 123 (4), 817-825, 2008 | 100 | 2008 |
Landscape of chromosomal copy number aberrations in gangliogliomas and dysembryoplastic neuroepithelial tumours AS Prabowo, HF van Thuijl, I Scheinin, D Sie, HF van Essen, AM Iyer, ... Neuropathology and applied neurobiology 41 (6), 743-755, 2015 | 46 | 2015 |
CanGEM: mining gene copy number changes in cancer I Scheinin, S Myllykangas, I Borze, T Böhling, S Knuutila, J Saharinen Nucleic acids research 36 (suppl_1), D830-D835, 2007 | 39 | 2007 |
Spatial and temporal evolution of distal 10q deletion, a prognostically unfavorable event in diffuse low-grade gliomas HF van Thuijl, I Scheinin, D Sie, A Alentorn, HF van Essen, M Cordes, ... Genome biology 15, 1-13, 2014 | 34 | 2014 |
miRNA expression profiles in myelodysplastic syndromes reveal Epstein–Barr virus miR-BART13 dysregulation I Borze, I Scheinin, S Siitonen, E Elonen, E Juvonen, S Knuutila Leukemia & lymphoma 52 (8), 1567-1573, 2011 | 28 | 2011 |
Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations VK Sarhadi, L Lahti, I Scheinin, A Tyybäkinoja, S Savola, A Usvasalo, ... Genomics 102 (3), 182-188, 2013 | 21 | 2013 |
Copy number alterations and neoplasia‐specific mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in different neoplasias VK Sarhadi, L Lahti, I Scheinin, P Ellonen, E Kettunen, M Serra, ... Genes, Chromosomes and Cancer 53 (7), 579-588, 2014 | 19 | 2014 |
Clinical value of chromosome arms 19q and 11p losses in low-grade gliomas A Alentorn, HF van Thuijl, Y Marie, H Alshehhi, C Carpentier, B Boisselier, ... Neuro-oncology 16 (3), 400-408, 2014 | 18 | 2014 |
High-resolution SNP array analysis of patients with developmental disorder and normal array CGH results L Siggberg, AM Sirpa, L Tarja, A Kristiina, S Ilari, K Kati, L Päivi, H Marja, ... BMC medical genetics 13, 1-10, 2012 | 16 | 2012 |
CGHpower: exploring sample size calculations for chromosomal copy number experiments I Scheinin, JA Ferreira, S Knuutila, GA Meijer, MA van de Wiel, B Ylstra BMC bioinformatics 11, 1-10, 2010 | 8 | 2010 |
New insights into the cellular pathways affected in primary uterine leiomyosarcoma S Kaur, ML Larramendy, M Gentile, C Svarvar, R Koivisto-Korander, ... Cancer Genomics & Proteomics 3 (6), 347-354, 2006 | 5 | 2006 |
Homozygous deletions of cadherin genes in chondrosarcoma—an array comparative genomic hybridization study T Niini, I Scheinin, L Lahti, S Savola, F Mertens, J Hollmén, T Böhling, ... Cancer genetics 205 (11), 588-593, 2012 | 4 | 2012 |