Tom O. Delmont
Tom O. Delmont
CNRS - Genoscope - TARA anvi-Oceans
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Anvi’o: an advanced analysis and visualization platform for ‘omics data
AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ...
PeerJ 3, e1319, 2015
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, S Lee, MS Rappé, ...
Nature microbiology 3 (7), 804-813, 2018
Accessing the soil metagenome for studies of microbial diversity
TO Delmont, P Robe, S Cecillon, IM Clark, F Constancias, P Simonet, ...
Applied and environmental microbiology 77 (4), 1315-1324, 2011
Large-scale metagenomic-based study of antibiotic resistance in the environment
J Nesme, S Cécillon, TO Delmont, JM Monier, TM Vogel, P Simonet
Current biology 24 (10), 1096-1100, 2014
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
TO Delmont, AM Eren
PeerJ 6, e4320, 2018
Structure, fluctuation and magnitude of a natural grassland soil metagenome
TO Delmont, E Prestat, KP Keegan, M Faubladier, P Robe, IM Clark, ...
The ISME journal 6 (9), 1677-1687, 2012
Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge
EM Bertrand, JP McCrow, A Moustafa, H Zheng, JB McQuaid, TO Delmont, ...
Proceedings of the National Academy of Sciences 112 (32), 9938-9943, 2015
Metagenomic comparison of direct and indirect soil DNA extraction approaches
TO Delmont, P Robe, I Clark, P Simonet, TM Vogel
Journal of microbiological methods 86 (3), 397-400, 2011
DESMAN: a new tool for de novo extraction of strains from metagenomes
C Quince, TO Delmont, S Raguideau, J Alneberg, AE Darling, G Collins, ...
Genome biology 18 (1), 1-22, 2017
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ...
Microbiome 9 (1), 1-13, 2021
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature microbiology 6 (1), 3-6, 2021
Metagenomic exploration of antibiotic resistance in soil
JM Monier, S Demanèche, TO Delmont, A Mathieu, TM Vogel, P Simonet
Current opinion in microbiology 14 (3), 229-235, 2011
Metagenomic mining for microbiologists
TO Delmont, C Malandain, E Prestat, C Larose, JM Monier, P Simonet, ...
The ISME journal 5 (12), 1837-1843, 2011
Peripartum antibiotics promote gut dysbiosis, loss of immune tolerance, and inflammatory bowel disease in genetically prone offspring
J Miyoshi, AM Bobe, S Miyoshi, Y Huang, N Hubert, TO Delmont, AM Eren, ...
Cell reports 20 (2), 491-504, 2017
Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies
TO Delmont, AM Eren
PeerJ 4, e1839, 2016
Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics
TO Delmont, AM Eren, L Maccario, E Prestat, ÖC Esen, E Pelletier, ...
Frontiers in microbiology 6, 358, 2015
Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya
TO Delmont, KM Hammar, HW Ducklow, PL Yager, AF Post
Frontiers in microbiology 5, 646, 2014
Microbial community development and unseen diversity recovery in inoculated sterile soil
TO Delmont, D Francioli, S Jacquesson, S Laoudi, A Mathieu, J Nesme, ...
Biology and fertility of soils 50 (7), 1069-1076, 2014
Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
TO Delmont, E Kiefl, O Kilinc, OC Esen, I Uysal, MS Rappe, S Giovannoni, ...
Elife 8, e46497, 2019
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
S Lee, SA Kahn, TO Delmont, A Shaiber, ÖC Esen, NA Hubert, ...
Microbiome 5 (1), 1-10, 2017
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Artículos 1–20