Brian John Parker
Brian John Parker
Assistant Professor in Computational Biology, New York University
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Cited by
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A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
JE Squires, HR Patel, M Nousch, T Sibbritt, DT Humphreys, BJ Parker, ...
Nucleic acids research 40 (11), 5023-5033, 2012
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
DF Simola, L Wissler, G Donahue, RM Waterhouse, M Helmkampf, ...
Genome research 23 (8), 1235-1247, 2013
Transcriptome-wide mapping of RNA 5-methylcytosine in Arabidopsis mRNAs and noncoding RNAs
R David, A Burgess, B Parker, J Li, K Pulsford, T Sibbritt, T Preiss, ...
The Plant Cell 29 (3), 445-460, 2017
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ...
Genome research 24 (3), 454-466, 2014
Histone H2A. Z inheritance during the cell cycle and its impact on promoter organization and dynamics
M Nekrasov, J Amrichova, BJ Parker, TA Soboleva, C Jack, R Williams, ...
Nature structural & molecular biology 19 (11), 1076-1083, 2012
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
BJ Parker, I Moltke, A Roth, S Washietl, J Wen, M Kellis, R Breaker, ...
Genome research 21 (11), 1929-1943, 2011
Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes
MF Lin, P Kheradpour, S Washietl, BJ Parker, JS Pedersen, M Kellis
Genome research 21 (11), 1916-1928, 2011
In Silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula
J Wen, BJ Parker, GF Weiller
In silico biology 7 (4-5), 485-505, 2007
Stratification bias in low signal microarray studies
BJ Parker, S GŁnter, J Bedo
BMC bioinformatics 8, 1-16, 2007
MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action
J Wen, BJ Parker, A Jacobsen, A Krogh
Rna 17 (5), 820-834, 2011
Systematic clustering of transcription start site landscapes
X Zhao, E Valen, BJ Parker, A Sandelin
PloS one 6 (8), e23409, 2011
A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A. B
TA Soboleva, BJ Parker, M Nekrasov, G Hart-Smith, YJ Tay, WQ Tng, ...
PLoS genetics 13 (2), e1006633, 2017
Graph-based Mumford-Shah segmentation of dynamic PET with application to input function estimation
BJ Parker, D Feng
IEEE Transactions on Nuclear Science 52 (1), 79-89, 2005
New insights into the cellular temporal response to proteostatic stress
J Rendleman, Z Cheng, S Maity, N Kastelic, M Munschauer, K Allgoewer, ...
Elife 7, e39054, 2018
Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Y Chen, M JÝrgensen, R Kolde, X Zhao, B Parker, E Valen, J Wen, ...
BMC genomics 12, 1-16, 2011
MiR‐492 impairs the angiogenic potential of endothelial cells
F Patella, E Leucci, M Evangelista, B Parker, J Wen, A Mercatanti, ...
Journal of cellular and molecular medicine 17 (8), 1006-1015, 2013
Predicting microRNA targets in time-series microarray experiments via functional data analysis
BJ Parker, J Wen
BMC bioinformatics 10, 1-10, 2009
Temporal processing of dynamic positron emission tomography via principal component analysis in the sinogram domain
Z Chen, BJ Parker, DD Feng, R Fulton
IEEE Transactions on Nuclear Science 51 (5), 2612-2619, 2004
Role of miRNAs and alternative mRNA 3′-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy
R Soetanto, CJ Hynes, HR Patel, DT Humphreys, M Evers, G Duan, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (5), 744-756, 2016
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