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Eitan Yaffe
Eitan Yaffe
Research Associate at Stanford and the Palo Alto Veterans Institute for Research
Dirección de correo verificada de stanford.edu
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Three-dimensional folding and functional organization principles of the Drosophila genome
T Sexton, E Yaffe, E Kenigsberg, F Bantignies, B Leblanc, M Hoichman, ...
Cell 148 (3), 458-472, 2012
20252012
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
T Nagano, Y Lubling, TJ Stevens, S Schoenfelder, E Yaffe, W Dean, ...
Nature 502 (7469), 59-64, 2013
15922013
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
E Yaffe, A Tanay
Nature genetics 43 (11), 1059-1065, 2011
7062011
Cohesin‐mediated interactions organize chromosomal domain architecture
S Sofueva, E Yaffe, WC Chan, D Georgopoulou, M Vietri Rudan, ...
The EMBO journal 32 (24), 3119-3129, 2013
4662013
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture
E Yaffe, S Farkash-Amar, A Polten, Z Yakhini, A Tanay, I Simon
PLoS genetics 6 (7), e1001011, 2010
1912010
Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
T Nagano, Y Lubling, E Yaffe, SW Wingett, W Dean, A Tanay, P Fraser
Nature protocols 10 (12), 1986-2003, 2015
1672015
MolAxis: efficient and accurate identification of channels in macromolecules
E Yaffe, D Fishelovitch, HJ Wolfson, D Halperin, R Nussinov
Proteins: Structure, Function, and Bioinformatics 73 (1), 72-86, 2008
1672008
Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation
E Yaffe, DA Relman
Nature microbiology 5 (2), 343-353, 2020
1172020
Profiling the human intestinal environment under physiological conditions
D Shalon, RN Culver, JA Grembi, J Folz, PV Treit, H Shi, FA Rosenberger, ...
Nature 617 (7961), 581-591, 2023
772023
Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila
B Schuettengruber, NO Elkayam, T Sexton, M Entrevan, S Stern, ...
Cell reports 9 (1), 219-233, 2014
752014
MolAxis: a server for identification of channels in macromolecules
E Yaffe, D Fishelovitch, HJ Wolfson, D Halperin, R Nussinov
Nucleic Acids Research 36 (suppl_2), W210-W215, 2008
752008
Architectures for Controller Based CDP.
G Laden, P Ta-Shma, E Yaffe, M Factor, S Fienblit
FAST 7, 21-36, 2007
672007
Approximating the pathway axis and the persistence diagram of a collection of balls in 3-space
E Yaffe, D Halperin
Proceedings of the twenty-fourth annual symposium on Computational geometry …, 2008
142008
Chromosome folding: driver or passenger of epigenetic state?
T Sexton, E Yaffe
Cold Spring Harbor perspectives in biology 7 (2), a018721, 2015
82015
Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device
D Shalon, RN Culver, JA Grembi, J Folz, P Treit, L Dethlefsen, X Meng, ...
bioRxiv, 2022.01. 19.476920, 2022
72022
Efficient construction of pathways in the complement of the union of balls in R3
E Yaffe
Tel Aviv University, 2007
52007
Benchmarking and testing OSD for correctness and compliance
D Naor, P Reshef, O Rodeh, A Shafrir, A Wolman, E Yaffe
Haifa Verification Conference, 158-176, 2005
42005
A short course of antibiotics selects for persistent resistance in the human gut
E Yaffe, L Dethlefsen, AV Patankar, C Gui, S Holmes, DA Relman
bioRxiv, 2023.09. 04.556257, 2023
2023
Corrigendum: Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
N Shalon, DA Relman, E Yaffe
Genome Research 32 (6), 12291, 2022
2022
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
N Shalon, DA Relman, E Yaffe
Genome Research 32 (5), 986-1003, 2022
2022
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Artículos 1–20