Jeffrey T. Chang
Jeffrey T. Chang
Associate Professor of Integrative Biology & Pharmacology, University of Texas Health Science Center
Verified email at
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Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422, 2009
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
AH Bild, G Yao, JT Chang, Q Wang, A Potti, D Chasse, MB Joshi, ...
Nature 439 (7074), 353-357, 2006
High tumor mutation burden fails to predict immune checkpoint blockade response across all cancer types
DJ McGrail, PG Pilié, NU Rashid, L Voorwerk, M Slagter, M Kok, ...
Annals of Oncology 32 (5), 661-672, 2021
High-dimensional sparse factor modeling: Applications in gene expression genomics
CM Carvalho, J Chang, JE Lucas, JR Nevins, Q Wang, M West
Journal of the American Statistical Association 103 (484), 1438-1456, 2008
Integrating genotype and phenotype information: an overview of the PharmGKB project
TE Klein, JT Chang, MK Cho, KL Easton, R Fergerson, M Hewett, Z Lin, ...
The pharmacogenomics journal 1 (3), 167-170, 2001
GATHER: a systems approach to interpreting genomic signatures
JT Chang, JR Nevins
Bioinformatics 22 (23), 2926-2933, 2006
Anchorage-independent cell growth signature identifies tumors with metastatic potential
S Mori, JT Chang, ER Andrechek, N Matsumura, T Baba, G Yao, JW Kim, ...
Oncogene 28 (31), 2796-2805, 2009
FOXC2 expression links epithelial–mesenchymal transition and stem cell properties in breast cancer
BG Hollier, AA Tinnirello, SJ Werden, KW Evans, JH Taube, TR Sarkar, ...
Cancer research 73 (6), 1981-1992, 2013
Creating an online dictionary of abbreviations from MEDLINE
JT Chang, H Schütze, RB Altman
Journal of the American Medical Informatics Association 9 (6), 612-620, 2002
Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
S Raychaudhuri, JT Chang, PD Sutphin, RB Altman
Genome Research 12 (1), 203-214, 2002
Resistance to neoadjuvant chemotherapy in triple-negative breast cancer mediated by a reversible drug-tolerant state
GV Echeverria, Z Ge, S Seth, X Zhang, S Jeter-Jones, X Zhou, S Cai, Y Tu, ...
Science translational medicine 11 (488), eaav0936, 2019
Biopython: Python tools for computational biology
B Chapman, J Chang
ACM Sigbio Newsletter 20 (2), 15-19, 2000
Functional genomics identifies five distinct molecular subtypes with clinical relevance and pathways for growth control in epithelial ovarian cancer
TZ Tan, QH Miow, RYJ Huang, MK Wong, J Ye, JA Lau, MC Wu, ...
EMBO molecular medicine 5 (7), 1051-1066, 2013
Basic microarray analysis: grouping and feature reduction
S Raychaudhuri, PD Sutphin, JT Chang, RB Altman
TRENDS in Biotechnology 19 (5), 189-193, 2001
Amplification and high-level expression of heat shock protein 90 marks aggressive phenotypes of human epidermal growth factor receptor 2 negative breast cancer
Q Cheng, JT Chang, J Geradts, LM Neckers, T Haystead, NL Spector, ...
Breast cancer research 14, 1-15, 2012
A dynamic bronchial airway gene expression signature of chronic obstructive pulmonary disease and lung function impairment
K Steiling, M Van Den Berge, K Hijazi, R Florido, J Campbell, G Liu, ...
American journal of respiratory and critical care medicine 187 (9), 933-942, 2013
Dissecting the heterogeneity of skin gene expression patterns in systemic sclerosis
S Assassi, WR Swindell, M Wu, FD Tan, D Khanna, DE Furst, DP Tashkin, ...
Arthritis & rheumatology 67 (11), 3016-3026, 2015
GAPSCORE: finding gene and protein names one word at a time
JT Chang, H Schütze, RB Altman
Bioinformatics 20 (2), 216-225, 2004
Epigenetic silencing of microRNA-203 is required for EMT and cancer stem cell properties
JH Taube, GG Malouf, E Lu, N Sphyris, V Vijay, PP Ramachandran, ...
Scientific reports 3 (1), 2687, 2013
Telomere dysfunction induces sirtuin repression that drives telomere-dependent disease
H Amano, A Chaudhury, C Rodriguez-Aguayo, L Lu, V Akhanov, A Catic, ...
Cell metabolism 29 (6), 1274-1290. e9, 2019
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