Kanika Arora
Kanika Arora
Principal Computational Biologist, MSKCC
Verified email at
Cited by
Cited by
Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer
H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes, TDD Somerville, ...
Cancer discovery 8 (9), 1112-1129, 2018
Immunogenic neoantigens derived from gene fusions stimulate T cell responses
W Yang, KW Lee, RM Srivastava, F Kuo, C Krishna, D Chowell, ...
Nature medicine 25 (5), 767-775, 2019
Genetic determinants of cisplatin resistance in patients with advanced germ cell tumors
A Bagrodia, BH Lee, W Lee, EK Cha, JP Sfakianos, G Iyer, EJ Pietzak, ...
Journal of Clinical Oncology 34 (33), 4000, 2016
Diverse alterations associated with resistance to KRAS (G12C) inhibition
Y Zhao, YR Murciano-Goroff, JY Xue, A Ang, J Lucas, TT Mai, ...
Nature 599 (7886), 679-683, 2021
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
Indel variant analysis of short-read sequencing data with Scalpel
H Fang, EA Bergmann, K Arora, V Vacic, MC Zody, I Iossifov, JA O'rawe, ...
Nature protocols 11 (12), 2529-2548, 2016
Genome-wide somatic variant calling using localized colored de Bruijn graphs
G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ...
Communications biology 1 (1), 20, 2018
Gene silencing in Tribolium castaneum as a tool for the targeted identification of candidate RNAi targets in crop pests
E Knorr, E Fishilevich, L Tenbusch, MLF Frey, M Rangasamy, A Billion, ...
Scientific reports 8 (1), 2061, 2018
PGBD5 promotes site-specific oncogenic mutations in human tumors
AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ...
Nature genetics 49 (7), 1005-1014, 2017
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
NA McNeer, J Philip, H Geiger, RE Ries, VP Lavallee, M Walsh, M Shah, ...
Leukemia 33 (8), 1934-1943, 2019
Conpair: concordance and contamination estimator for matched tumor–normal pairs
EA Bergmann, BJ Chen, K Arora, V Vacic, MC Zody
Bioinformatics 32 (20), 3196-3198, 2016
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma
KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ...
Neurology Genetics 3 (4), 2017
Use of chromatin remodeling ATPases as RNAi targets for parental control of western corn rootworm (Diabrotica virgifera virgifera) and Neotropical brown stink bug (Euschistus …
E Fishilevich, AM Vélez, C Khajuria, MLF Frey, RL Hamm, H Wang, ...
Insect biochemistry and molecular biology 71, 58-71, 2016
Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms
K Arora, M Shah, M Johnson, R Sanghvi, J Shelton, K Nagulapalli, ...
Scientific reports 9 (1), 19123, 2019
Ancestry-driven recalibration of tumor mutational burden and disparate clinical outcomes in response to immune checkpoint inhibitors
AH Nassar, E Adib, S Abou Alaiwi, T El Zarif, S Groha, EW Akl, PV Nuzzo, ...
Cancer Cell 40 (10), 1161-1172. e5, 2022
Integrative genetic analysis of mouse and human AML identifies cooperating disease alleles
MA Hatlen, K Arora, V Vacic, EA Grabowska, W Liao, B Riley-Gillis, ...
Journal of Experimental Medicine 213 (1), 25-34, 2016
African ancestry–associated gene expression profiles in triple-negative breast cancer underlie altered tumor biology and clinical outcome in women of African descent
R Martini, P Delpe, TR Chu, K Arora, B Lord, A Verma, D Bedi, B Karanam, ...
Cancer discovery 12 (11), 2530-2551, 2022
Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF-mutant pancreatic adenocarcinoma
KO Wrzeszczynski, S Rahman, MO Frank, K Arora, M Shah, H Geiger, ...
Molecular Case Studies 5 (6), a004424, 2019
Differences in prostate cancer genomes by self-reported race: contributions of genetic ancestry, modifiable cancer risk factors, and clinical factors
KH Stopsack, S Nandakumar, K Arora, B Nguyen, SE Vasselman, B Nweji, ...
Clinical Cancer Research 28 (2), 318-326, 2022
Analytical validation of clinical whole-genome and transcriptome sequencing of patient-derived tumors for reporting targetable variants in cancer
KO Wrzeszczynski, V Felice, A Abhyankar, L Kozon, H Geiger, D Manaa, ...
The Journal of Molecular Diagnostics 20 (6), 822-835, 2018
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