| Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes K Chen, Z Chen, D Wu, L Zhang, X Lin, J Su, B Rodriguez, Y Xi, Z Xia, ... Nature genetics 47 (10), 1149-1157, 2015 | 353 | 2015 |
| DNMT3A and TET2 compete and cooperate to repress lineage-specific transcription factors in hematopoietic stem cells X Zhang, J Su, M Jeong, M Ko, Y Huang, HJ Park, A Guzman, Y Lei, ... Nature genetics 48 (9), 1014-1023, 2016 | 268 | 2016 |
| Identification of tumor immune infiltration-associated lncRNAs for improving prognosis and immunotherapy response of patients with non-small cell lung cancer J Sun, Z Zhang, S Bao, C Yan, P Hou, N Wu, J Su, L Xu, M Zhou Journal for immunotherapy of cancer 8 (1), 2020 | 238 | 2020 |
| DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A YH Huang, J Su, Y Lei, L Brunetti, MC Gundry, X Zhang, M Jeong, W Li, ... Genome biology 18, 1-11, 2017 | 235 | 2017 |
| Targeted DNA methylation in vivo using an engineered dCas9-MQ1 fusion protein Y Lei, X Zhang, J Su, M Jeong, MC Gundry, YH Huang, Y Zhou, W Li, ... Nature communications 8 (1), 16026, 2017 | 225 | 2017 |
| DNMT3A and TET1 cooperate to regulate promoter epigenetic landscapes in mouse embryonic stem cells T Gu, X Lin, SM Cullen, M Luo, M Jeong, M Estecio, J Shen, S Hardikar, ... Genome biology 19, 1-15, 2018 | 163 | 2018 |
| 3′ UTR shortening represses tumor-suppressor genes in trans by disrupting ceRNA crosstalk HJ Park, P Ji, S Kim, Z Xia, B Rodriguez, L Li, J Su, K Chen, CP Masamha, ... Nature genetics 50 (6), 783-789, 2018 | 156 | 2018 |
| Computational recognition of lncRNA signature of tumor-infiltrating B lymphocytes with potential implications in prognosis and immunotherapy of bladder cancer M Zhou, Z Zhang, S Bao, P Hou, C Yan, J Su, J Sun Briefings in Bioinformatics 22 (3), bbaa047, 2021 | 154 | 2021 |
| QDMR: a quantitative method for identification of differentially methylated regions by entropy Y Zhang, H Liu, J Lv, X Xiao, J Zhu, X Liu, J Su, X Li, Q Wu, F Wang, Y Cui Nucleic acids research 39 (9), e58-e58, 2011 | 152 | 2011 |
| COVID-19 quarantine reveals that behavioral changes have an effect on myopia progression L Xu, Y Ma, J Yuan, Y Zhang, H Wang, G Zhang, C Tu, X Lu, J Li, Y Xiong, ... Ophthalmology 128 (11), 1652-1654, 2021 | 125 | 2021 |
| Computational identification of mutator-derived lncRNA signatures of genome instability for improving the clinical outcome of cancers: a case study in breast cancer S Bao, H Zhao, J Yuan, D Fan, Z Zhang, J Su, M Zhou Briefings in bioinformatics 21 (5), 1742-1755, 2020 | 121 | 2020 |
| Homeobox oncogene activation by pan-cancer DNA hypermethylation J Su, YH Huang, X Cui, X Wang, X Zhang, Y Lei, J Xu, X Lin, K Chen, J Lv, ... Genome biology 19, 1-12, 2018 | 115 | 2018 |
| DiseaseMeth: a human disease methylation database J Lv, H Liu, J Su, X Wu, H Liu, B Li, X Xiao, F Wang, Q Wu, Y Zhang Nucleic acids research 40 (D1), D1030-D1035, 2012 | 115 | 2012 |
| Human embryonic stem cell-derived organoid retinoblastoma reveals a cancerous origin H Liu, Y Zhang, YY Zhang, YP Li, ZQ Hua, CJ Zhang, KC Wu, F Yu, ... Proceedings of the National Academy of Sciences 117 (52), 33628-33638, 2020 | 111 | 2020 |
| HHMD: the human histone modification database Y Zhang, J Lv, H Liu, J Zhu, J Su, Q Wu, Y Qi, F Wang, X Li Nucleic acids research 38 (suppl_1), D149-D154, 2010 | 108 | 2010 |
| SEA: a super-enhancer archive Y Wei, S Zhang, S Shang, B Zhang, S Li, X Wang, F Wang, J Su, Q Wu, ... Nucleic acids research 44 (D1), D172-D179, 2016 | 101 | 2016 |
| Recurrence-associated long non-coding RNA signature for determining the risk of recurrence in patients with colon cancer M Zhou, L Hu, Z Zhang, N Wu, J Sun, J Su Molecular Therapy-Nucleic Acids 12, 518-529, 2018 | 99 | 2018 |
| Analysis of long noncoding RNAs highlights region-specific altered expression patterns and diagnostic roles in Alzheimer’s disease M Zhou, H Zhao, X Wang, J Sun, J Su Briefings in bioinformatics 20 (2), 598-608, 2019 | 95 | 2019 |
| Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the … H Liu, X Liu, S Zhang, J Lv, S Li, S Shang, S Jia, Y Wei, F Wang, J Su, ... Nucleic acids research 44 (1), 75-94, 2016 | 89 | 2016 |
| Large DNA methylation nadirs anchor chromatin loops maintaining hematopoietic stem cell identity X Zhang, M Jeong, X Huang, XQ Wang, X Wang, W Zhou, MS Shamim, ... Molecular cell 78 (3), 506-521. e6, 2020 | 82 | 2020 |
Hongbo LiuUniversity of RochesterVerified email at URMC.Rochester.edu
