Graham McVicker
Graham McVicker
Associate Professor, Salk Institute
Verified email at - Homepage
Cited by
Cited by
Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
BJ Schmiedel, D Singh, A Madrigal, AG Valdovino-Gonzalez, BM White, ...
Cell 175 (6), 1701-1715. e16, 2018
Ensembl 2005
T Hubbard, D Andrews, M Cáccamo, G Cameron, Y Chen, M Clamp, ...
Nucleic acids research 33 (suppl 1), D447-D453, 2005
An overview of Ensembl
E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, ...
Genome research 14 (5), 925-928, 2004
Brain cell type–specific enhancer–promoter interactome maps and disease-risk association
A Nott, IR Holtman, NG Coufal, JCM Schlachetzki, M Yu, R Hu, CZ Han, ...
Science 366 (6469), 1134-1139, 2019
WASP: allele-specific software for robust molecular quantitative trait locus discovery
B van de Geijn, G McVicker, Y Gilad, JK Pritchard
Nature Methods 12 (11), 1061-1063, 2015
Identification of genetic variants that affect histone modifications in human cells
G McVicker, B van de Geijn, JF Degner, CE Cain, NE Banovich, A Raj, ...
Science 342 (6159), 747-749, 2013
Widespread genomic signatures of natural selection in hominid evolution
G McVicker, D Gordon, C Davis, P Green
PLoS genetics 5 (5), e1000471, 2009
Controls of nucleosome positioning in the human genome
DJ Gaffney, G McVicker, AA Pai, YN Fondufe-Mittendorf, N Lewellen, ...
PLoS genetics 8 (11), e1003036, 2012
Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLoS genetics 10 (9), e1004663, 2014
Ensembl 2004
E Birney, D Andrews, P Bevan, M Caccamo, G Cameron, Y Chen, ...
Nucleic acids research 32 (suppl 1), D468-D470, 2004
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts
CA D’Souza, JW Kronstad, G Taylor, R Warren, M Yuen, G Hu, WH Jung, ...
MBio 2 (1), e00342-10, 2011
The Ensembl core software libraries
A Stabenau, G McVicker, C Melsopp, G Proctor, M Clamp, E Birney
Genome research 14 (5), 929-933, 2004
A genomic map of the effects of linked selection in Drosophila
E Elyashiv, S Sattath, TT Hu, A Strutsovsky, G McVicker, P Andolfatto, ...
PLoS Genet 12 (8), e1006130, 2016
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection
RD George, G McVicker, R Diederich, SB Ng, AP MacKenzie, ...
Genome research 21 (10), 1686-1694, 2011
The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation
N Nalabothula, G McVicker, J Maiorano, R Martin, JK Pritchard, ...
BMC Genomics 15 (1), 92, 2014
Genomic signatures of germline gene expression
G McVicker, P Green
Genome research 20 (11), 1503-1511, 2010
GeneComber: combining outputs of gene prediction programs for improved results
SP Shah, GP McVicker, AK Mackworth, S Rogic, BFF Ouellette
Bioinformatics 19 (10), 1296-1297, 2003
Structural variants drive context-dependent oncogene activation in cancer
Z Xu, DS Lee, S Chandran, VT Le, R Bump, J Yasis, S Dallarda, ...
Nature 612 (7940), 564-572, 2022
Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq
AR Massarat, A Sen, J Jaureguy, ST Tyndale, Y Fu, G Erikson, ...
Nucleic Acids Research 49 (20), 7986-7994, 2021
Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation
PB Chen, PC Fiaux, K Zhang, B Li, N Kubo, S Jiang, R Hu, E Rooholfada, ...
Cell Reports 41 (6), 111630, 2022
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