| bpRNA: Large-scale Automated Annotation and Analysis of RNA Secondary Structure P Danaee, M Rouches, M Wiley, D Deng, L Huang, DA Hendrix Nucleic Acids Research 46 (11), 5381-5394, 2018 | 166 | 2018 |
| LinearFold: linear-time approximate RNA folding by 5'-to-3'dynamic programming and beam search L Huang, H Zhang, D Deng, K Zhao, K Liu, DA Hendrix, DH Mathews Bioinformatics 35 (14), i295-i304, 2019 | 145 | 2019 |
| Accelerated tests for evaluating the air-cathode aging in microbial fuel cells N Gao, Y Fan, L Wang, F Long, D Deng, H Liu Bioresource Technology 297, 122479, 2020 | 7 | 2020 |
| Linearfold: Linear-time prediction of rna secondary structures D Deng, K Zhao, D Hendrix, DH Mathews, L Huang bioRxiv, 263509, 2018 | 5 | 2018 |
| DeepSloop: a recurrent neural network learns complex rules to detect stem-loop-forming RNA sequences D Deng, D Holman, DA Hendrix 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 2 | 2019 |
| Improving transformer secondary structure predictions with secondary structure” fixing” task J Hong, D Deng, DA Hendrix Machine Learning in Computational Biology, 267-278, 2024 | | 2024 |
| Computational Approaches for RNA Structure Prediction with Dynamic Programming and Deep Neural Networks D Deng | | 2019 |
| An Overview of Transliteration D Deng the Graduate Center, the City University of New York, 2015 | | 2015 |
David A HendrixOregon State UniversityVerified email at oregonstate.edu
