| An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex Y Zhang, K Chen, SA Sloan, ML Bennett, AR Scholze, S O'Keeffe, ... Journal of Neuroscience 34 (36), 11929-11947, 2014 | 4974 | 2014 |
| FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism JC Darnell, SJ Van Driesche, C Zhang, KYS Hung, A Mele, CE Fraser, ... Cell 146 (2), 247-261, 2011 | 2324 | 2011 |
| The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult B Zhang, G Arun, YS Mao, Z Lazar, G Hung, G Bhattacharjee, X Xiao, ... Cell reports 2 (1), 111-123, 2012 | 648 | 2012 |
| An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers PJ Smith, C Zhang, J Wang, SL Chew, MQ Zhang, AR Krainer Human molecular genetics 15 (16), 2490-2508, 2006 | 622 | 2006 |
| Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data C Zhang, RB Darnell Nature biotechnology 29 (7), 607-614, 2011 | 457 | 2011 |
| Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence A Chicas, X Wang, C Zhang, M McCurrach, Z Zhao, O Mert, RA Dickins, ... Cancer cell 17 (4), 376-387, 2010 | 439 | 2010 |
| Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ... Neuron 75 (3), 437-450, 2012 | 386 | 2012 |
| HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism SM Weyn-Vanhentenryck, A Mele, Q Yan, S Sun, N Farny, Z Zhang, ... Cell reports 6 (6), 1139-1152, 2014 | 384 | 2014 |
| Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines JC Castle, C Zhang, JK Shah, AV Kulkarni, A Kalsotra, TA Cooper, ... Nature genetics 40 (12), 1416-1425, 2008 | 377 | 2008 |
| Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2 C Zhang, Z Zhang, J Castle, S Sun, J Johnson, AR Krainer, MQ Zhang Genes & development 22 (18), 2550-2563, 2008 | 351 | 2008 |
| Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease R Batra, K Charizanis, M Manchanda, A Mohan, M Li, DJ Finn, ... Molecular cell 56 (2), 311-322, 2014 | 335 | 2014 |
| Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls C Zhang, MA Frias, A Mele, M Ruggiu, T Eom, CB Marney, H Wang, ... Science 329 (5990), 439-443, 2010 | 335 | 2010 |
| Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis MJ Moore, C Zhang, EC Gantman, A Mele, JC Darnell, RB Darnell Nature protocols 9 (2), 263-293, 2014 | 292 | 2014 |
| Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability G Ince-Dunn, HJ Okano, KB Jensen, WY Park, R Zhong, J Ule, A Mele, ... Neuron 75 (6), 1067-1080, 2012 | 228 | 2012 |
| Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain DD Licatalosi, M Yano, JJ Fak, A Mele, SE Grabinski, C Zhang, ... Genes & development 26 (14), 1626-1642, 2012 | 227 | 2012 |
| Precise temporal regulation of alternative splicing during neural development SM Weyn-Vanhentenryck, H Feng, D Ustianenko, R Duffie, Q Yan, ... Nature Communications, 2189, 2018 | 221 | 2018 |
| Stage-specific requirement for Mettl3-dependent m 6 A mRNA methylation during haematopoietic stem cell differentiation H Lee, S Bao, Y Qian, S Geula, J Leslie, C Zhang, JH Hanna, L Ding Nature cell biology 21 (6), 700-709, 2019 | 212 | 2019 |
| Capturing the interactome of newly transcribed RNA X Bao, X Guo, M Yin, M Tariq, Y Lai, S Kanwal, J Zhou, N Li, Y Lv, ... Nature methods 15 (3), 213-220, 2018 | 210 | 2018 |
| CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data A Shah, Y Qian, SM Weyn-Vanhentenryck, C Zhang Bioinformatics 33 (4), 566-567, 2016 | 174 | 2016 |
| Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators Q Yan, SM Weyn-Vanhentenryck, J Wu, SA Sloan, Y Zhang, K Chen, ... Proceedings of the National Academy of Sciences 112 (11), 3445-3450, 2015 | 167 | 2015 |
Robert B DarnellProfessor, Rockefeller University; Investigator, HHMI; Founding Director, NY Genome CenterVerified email at rockefeller.edu
