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Ipek Oguz
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Framework for the statistical shape analysis of brain structures using SPHARM-PDM
M Styner, I Oguz, S Xu, C Brechbühler, D Pantazis, JJ Levitt, ME Shenton, ...
Medical image computing and computer-assisted intervention: MICCAI …, 2006
4802006
DTIPrep: quality control of diffusion-weighted images
I Oguz, M Farzinfar, J Matsui, F Budin, Z Liu, G Gerig, HJ Johnson, ...
Frontiers in neuroinformatics 8, 4, 2014
2382014
Particle-guided image registration
J Lee, I Lyu, İ Oğuz, MA Styner
International Conference on Medical Image Computing and Computer-Assisted …, 2013
156*2013
Adolescent binge ethanol treatment alters adult brain regional volumes, cortical extracellular matrix protein and behavioral flexibility
LG Coleman Jr, W Liu, I Oguz, M Styner, FT Crews
Pharmacology Biochemistry and Behavior 116, 142-151, 2014
1522014
Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent
RJ Lipinski, P Hammond, SK O’Leary-Moore, JJ Ament, SJ Pecevich, ...
PLoS One 7 (8), e43067, 2012
1462012
Information Processing in Medical Imaging
I Oguz, M Niethammer, J Cates, R Whitaker, T Fletcher, C Vachet, ...
Berlin: Springer, 2009
130*2009
Computed tomography predictors of response to endobronchial valve lung reduction treatment. Comparison with Chartis
M Schuhmann, P Raffy, Y Yin, D Gompelmann, I Oguz, R Eberhardt, ...
American journal of respiratory and critical care medicine 191 (7), 767-774, 2015
1252015
User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP
PA Yushkevich, A Pashchinskiy, I Oguz, S Mohan, JE Schmitt, JM Stein, ...
Neuroinformatics 17 (1), 83-102, 2019
892019
Mechanically Induced Focal Adhesion Assembly Amplifies Anti‐Adipogenic Pathways in Mesenchymal Stem Cells
B Sen, C Guilluy, Z Xie, N Case, M Styner, J Thomas, I Oguz, C Rubin, ...
STEM CELLS 29 (11), 1829-1836, 2011
842011
RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI
I Oguz, H Zhang, A Rumple, M Sonka
Journal of neuroscience methods 221, 175-182, 2014
772014
Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis
A Carass, S Roy, A Gherman, JC Reinhold, A Jesson, T Arbel, O Maier, ...
Scientific Reports 10 (1), 1-19, 2020
682020
Statistical group differences in anatomical shape analysis using Hotelling T2 metric
M Styner, I Oguz, S Xu, D Pantazis, G Gerig
Medical Imaging, 65123Z-65123Z-11, 2007
62*2007
Brain abnormalities in bipolar disorder detected by quantitative T1ρ mapping
CP Johnson, RL Follmer, I Oguz, LA Warren, GE Christensen, ...
Molecular psychiatry 20 (2), 201-206, 2015
552015
Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis
LG Coleman Jr, I Oguz, J Lee, M Styner, FT Crews
Alcohol 46 (6), 603-612, 2012
512012
Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice
SE Parnell, HT Holloway, SK O'Leary-Moore, DB Dehart, B Paniaqua, ...
Neurotoxicology and teratology 39, 77-83, 2013
482013
Implementing the automatic generation of 3D statistical shape models with ITK
T Heimann, I Oguz, I Wolf, M Styner, HP Meinzer
The Insight Journal—MICCAI Open Science Workshop, Copenhagen, 2006
482006
3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain
A Rumple, M McMurray, J Johns, J Lauder, P Makam, M Radcliffe, I Oguz
PLOS ONE 8 (7), e67334, 2013
462013
Comparison of Magnetic Resonance Imaging in Live vs. Post Mortem Rat Brains
I Oguz, R Yaxley, F Budin, M Hoogstoel, J Lee, E Maltbie, W Liu, ...
PLOS ONE 8 (8), e71027, 2013
442013
Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5 D Stacked Slices
H Zhang, AM Valcarcel, R Bakshi, R Chu, F Bagnato, RT Shinohara, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2019
432019
Cortical correspondence using entropy-based particle systems and local features
I Oguz, J Cates, T Fletcher, R Whitaker, D Cool, S Aylward, M Styner
Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE …, 2008
432008
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