| Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (11), 2221-2234, 2004 | 383 | 2004 |
| RNA editing derived epitopes function as cancer antigens to elicit immune responses M Zhang, J Fritsche, J Roszik, LJ Williams, X Peng, Y Chiu, CC Tsou, ... Nature communications 9 (1), 3919, 2018 | 124 | 2018 |
| Combination of PD-1 inhibitor and OX40 agonist induces tumor rejection and immune memory in mouse models of pancreatic cancer Y Ma, J Li, H Wang, Y Chiu, CV Kingsley, D Fry, SN Delaney, SC Wei, ... Gastroenterology 159 (1), 306-319. e12, 2020 | 95 | 2020 |
| Integrated approach to identify heparan sulfate ligand requirements of Robo1 C Zong, R Huang, E Condac, Y Chiu, W Xiao, X Li, W Lu, M Ishihara, ... Journal of the American Chemical Society 138 (39), 13059-13067, 2016 | 54 | 2016 |
| Neoantigen vaccination induces clinical and immunologic responses in non-small cell lung cancer patients harboring EGFR mutations F Li, L Deng, KR Jackson, AH Talukder, AS Katailiha, SD Bradley, Q Zou, ... Journal for immunotherapy of cancer 9 (7), 2021 | 38 | 2021 |
| De novo sequencing of complex mixtures of heparan sulfate oligosaccharides R Huang, C Zong, A Venot, Y Chiu, D Zhou, GJ Boons, JS Sharp Analytical chemistry 88 (10), 5299-5307, 2016 | 35 | 2016 |
| GAG-ID: Heparan Sulfate (HS) and Heparin Glycosaminoglycan High-Throughput Identification Software*[S] Y Chiu, R Huang, R Orlando, JS Sharp Molecular & Cellular Proteomics 14 (6), 1720-1730, 2015 | 32 | 2015 |
| Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program F Hasan, Y Chiu, RM Shaw, J Wang, C Yee JCI insight 6 (10), 2021 | 29 | 2021 |
| Mass spectrometric identification of immunogenic SARS-CoV-2 epitopes and cognate TCRs K Pan, Y Chiu, E Huang, M Chen, J Wang, I Lai, S Singh, RM Shaw, ... Proceedings of the National Academy of Sciences 118 (46), e2111815118, 2021 | 25 | 2021 |
| Proteome Analysis of Halobacterium sp. NRC-1 Facilitated by the Biomodule Analysis Tool BMSorter* S RR Gan, CY Eugene, Y Chiu, H Lee, PK Yu-chieh, TH Wu, R Aebersold, ... Molecular & Cellular Proteomics 5 (6), 987-997, 2006 | 22 | 2006 |
| Vestigial-like 1 is a shared targetable cancer-placenta antigen expressed by pancreatic and basal-like breast cancers SD Bradley, AH Talukder, I Lai, R Davis, H Alvarez, H Tiriac, M Zhang, ... Nature communications 11 (1), 5332, 2020 | 20 | 2020 |
| SoS Notebook: an interactive multi-language data analysis environment B Peng, G Wang, J Ma, MC Leong, C Wakefield, J Melott, Y Chiu, D Du, ... Bioinformatics 34 (21), 3768-3770, 2018 | 14 | 2018 |
| A multivariate mixture model to estimate the accuracy of glycosaminoglycan identifications made by tandem mass spectrometry (MS/MS) and database search Y Chiu, P Schliekelman, R Orlando, JS Sharp Molecular & cellular proteomics 16 (2), 255-264, 2017 | 14 | 2017 |
| Novel anaplastic thyroid cancer PDXs and cell lines: expanding preclinical models of genetic diversity A Maniakas, YC Henderson, H Hei, S Peng, Y Chen, Y Jiang, S Ji, ... The Journal of Clinical Endocrinology & Metabolism 106 (11), e4652-e4665, 2021 | 12 | 2021 |
| CRISPR/Cas9 screen uncovers functional translation of cryptic lncRNA-encoded open reading frames in human cancer C Zheng, Y Wei, P Zhang, L Xu, Z Zhang, K Lin, J Hou, X Lv, Y Ding, ... The Journal of Clinical Investigation 133 (5), 2023 | 11 | 2023 |
| Harnessing the synergy of perfusable muscle flap matrix and adipose-derived stem cells for prevascularization and macrophage polarization to reconstruct volumetric muscle loss Q Zhang, Y Chiu, Y Chen, Y Wu, LW Dunne, RD Largo, EI Chang, ... Bioactive Materials 22, 588-614, 2023 | 7 | 2023 |
| RNA editing derived epitopes function as cancer antigens to elicit immune responses. Nat Commun. 2018; 9: 3919 M Zhang, J Fritsche, J Roszik, LJ Williams, X Peng, Y Chiu, CC Tsou, ... Nature Publishing Group, 0 | 6 | |
| Response envelope analysis for quantitative evaluation of drug combinations D Du, CH Chang, Y Wang, P Tong, WK Chan, Y Chiu, B Peng, L Tan, ... Bioinformatics 35 (19), 3761-3770, 2019 | 5 | 2019 |
| Erratum: Genome sequence of Haloarcula marismortui: A halophilic archaeon from the dead sea (Genome Research (2004) vol. 14 (2221-2234)) NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (12), 2510, 2004 | 5 | 2004 |
| Charge-based interactions through peptide position 4 drive diversity of antigen presentation by human leukocyte antigen class I molecules KR Jackson, DA Antunes, AH Talukder, AR Maleki, K Amagai, A Salmon, ... PNAS nexus 1 (3), pgac124, 2022 | 4 | 2022 |
