| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17227 | 2012 |
| The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse P Grote, L Wittler, D Hendrix, F Koch, S Währisch, A Beisaw, K Macura, ... Developmental cell 24 (2), 206-214, 2013 | 1079 | 2013 |
| The genome of the Western clawed frog Xenopus tropicalis U Hellsten, RM Harland, MJ Gilchrist, D Hendrix, J Jurka, V Kapitonov, ... Science 328 (5978), 633-636, 2010 | 927 | 2010 |
| Shadow enhancers as a source of evolutionary novelty JW Hong, DA Hendrix, MS Levine Science 321 (5894), 1314-1314, 2008 | 585 | 2008 |
| A deep learning approach for cancer detection and relevant gene identification P Danaee, R Ghaeini, DA Hendrix Pacific symposium on biocomputing. pacific symposium on biocomputing 22, 219, 2016 | 403 | 2016 |
| A “fast growth” method of computing free energy differences DA Hendrix, C Jarzynski The Journal of Chemical Physics 114 (14), 5974-5981, 2001 | 226 | 2001 |
| Promoter elements associated with RNA Pol II stalling in the Drosophila embryo DA Hendrix, JW Hong, J Zeitlinger, DS Rokhsar, MS Levine Proceedings of the National Academy of Sciences 105 (22), 7762-7767, 2008 | 201 | 2008 |
| A distinct class of small RNAs arises from pre-miRNA–proximal regions in a simple chordate W Shi, D Hendrix, M Levine, B Haley Nature structural & molecular biology 16 (2), 183-189, 2009 | 172 | 2009 |
| Neural-specific elongation of 3′ UTRs during Drosophila development V Hilgers, MW Perry, D Hendrix, A Stark, M Levine, B Haley Proceedings of the National Academy of Sciences 108 (38), 15864-15869, 2011 | 170 | 2011 |
| bpRNA: large-scale automated annotation and analysis of RNA secondary structure P Danaee, M Rouches, M Wiley, D Deng, L Huang, D Hendrix Nucleic acids research 46 (11), 5381-5394, 2018 | 166 | 2018 |
| How the Dorsal gradient works: insights from postgenome technologies JW Hong, DA Hendrix, D Papatsenko, MS Levine Proceedings of the National Academy of Sciences 105 (51), 20072-20076, 2008 | 154 | 2008 |
| LinearFold: linear-time approximate RNA folding by 5'-to-3'dynamic programming and beam search L Huang, H Zhang, D Deng, K Zhao, K Liu, DA Hendrix, DH Mathews Bioinformatics 35 (14), i295-i304, 2019 | 150 | 2019 |
| miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data D Hendrix, M Levine, W Shi Genome biology 11, 1-12, 2010 | 126 | 2010 |
| Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging RC Kuintzle, ES Chow, TN Westby, BO Gvakharia, JM Giebultowicz, ... Nature Communications 8 (1), 14529, 2017 | 104 | 2017 |
| A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential ST Hill, R Kuintzle, A Teegarden, E Merrill III, P Danaee, DA Hendrix Nucleic acids research 46 (16), 8105-8113, 2018 | 100 | 2018 |
| Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer LM Beaver, R Kuintzle, A Buchanan, MW Wiley, ST Glasser, CP Wong, ... The Journal of nutritional biochemistry 42, 72-83, 2017 | 98 | 2017 |
| A simplified miRNA-based gene silencing method for Drosophila melanogaster B Haley, D Hendrix, V Trang, M Levine Developmental biology 321 (2), 482-490, 2008 | 96 | 2008 |
| Transcription factor binding site identification using the self-organizing map S Mahony, D Hendrix, A Golden, TJ Smith, DS Rokhsar Bioinformatics 21 (9), 1807-1814, 2005 | 91 | 2005 |
| The lncRNA locus handsdown regulates cardiac gene programs and is essential for early mouse development N Ritter, T Ali, N Kopitchinski, P Schuster, A Beisaw, DA Hendrix, ... Developmental cell 50 (5), 644-657. e8, 2019 | 86 | 2019 |
| PRC2 is required to maintain expression of the maternal Gtl2-Rian-Mirg locus by preventing de novo DNA methylation in mouse embryonic stem cells PP Das, DA Hendrix, E Apostolou, AH Buchner, MC Canver, S Beyaz, ... Cell reports 12 (9), 1456-1470, 2015 | 77 | 2015 |
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
