| GoMiner: a resource for biological interpretation of genomic and proteomic data BR Zeeberg, W Feng, G Wang, MD Wang, AT Fojo, M Sunshine, ... Genome biology 4 (4), 1-8, 2003 | 1444 | 2003 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 751 | 2010 |
| CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ... Cancer research 72 (14), 3499-3511, 2012 | 639 | 2012 |
| High-Throughput GoMiner, an'industrial-strength'integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common … BR Zeeberg, H Qin, S Narasimhan, M Sunshine, H Cao, DW Kane, ... BMC bioinformatics 6, 1-18, 2005 | 326 | 2005 |
| CellMiner: a relational database and query tool for the NCI-60 cancer cell lines UT Shankavaram, S Varma, D Kane, M Sunshine, KK Chary, ... BMC genomics 10 (1), 1-10, 2009 | 296 | 2009 |
| MatchMiner: a tool for batch navigation among gene and gene product identifiers KJ Bussey, D Kane, M Sunshine, S Narasimhan, S Nishizuka, ... Genome biology 4, 1-7, 2003 | 192 | 2003 |
| CellMinerCDB for integrative cross-database genomics and pharmacogenomics analyses of cancer cell lines VN Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, ... Iscience 10, 247-264, 2018 | 95 | 2018 |
| Using CellMiner 1.6 for Systems Pharmacology and Genomic Analysis of the NCI-60CellMiner for Systems Pharmacology WC Reinhold, M Sunshine, S Varma, JH Doroshow, Y Pommier Clinical Cancer Research 21 (17), 3841-3852, 2015 | 80 | 2015 |
| RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDBRNA Sequencing of the NCI-60 WC Reinhold, S Varma, M Sunshine, F Elloumi, K Ofori-Atta, S Lee, ... Cancer research 79 (13), 3514-3524, 2019 | 49 | 2019 |
| The NCI-60 Methylome and Its Integration into CellMinerNCI-60 Methylome WC Reinhold, S Varma, M Sunshine, V Rajapakse, A Luna, KW Kohn, ... Cancer research 77 (3), 601-612, 2017 | 48 | 2017 |
| NCI-60 whole exome sequencing and pharmacological CellMiner analyses WC Reinhold, S Varma, F Sousa, M Sunshine, OD Abaan, SR Davis, ... PloS one 9 (7), e101670, 2014 | 45 | 2014 |
| AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies SM Major, S Nishizuka, D Morita, R Rowland, M Sunshine, ... BMC bioinformatics 7 (1), 1-10, 2006 | 44 | 2006 |
| High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner S Varma, Y Pommier, M Sunshine, JN Weinstein, WC Reinhold PloS one 9 (3), e92047, 2014 | 41 | 2014 |
| Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes KW Kohn, BR Zeeberg, WC Reinhold, M Sunshine, A Luna, Y Pommier PLoS One 7 (5), e35716, 2012 | 34 | 2012 |
| A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method A Luna, EI Karac, M Sunshine, L Chang, R Nussinov, MI Aladjem, ... BMC bioinformatics 12, 1-13, 2011 | 34 | 2011 |
| PathVisio-MIM: PathVisio plugin for creating and editing molecular interaction maps (MIMs) A Luna, ML Sunshine, MP van Iersel, MI Aladjem, KW Kohn Bioinformatics 27 (15), 2165-2166, 2011 | 20 | 2011 |
| 268 CellMiner: a Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set Y Pommier, WC Reinhold, M Sunshine, SH Varma, KW Kohn, ... European Journal of Cancer, 82, 2012 | 4 | 2012 |
| Integrative analysis of pharmacogenomics in major cancer cell line databases using CellMinerCDB VN Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, ... bioRxiv, 292904, 2018 | 2 | 2018 |
| CellMiner and CellMiner cross-database (CDB) as a foundation for the exploration of pharmacogenomics through the use of cancerous cell-lines WC Reinhold, M Sunshine, S Varma, F Elloumi, Y Pommier Cancer Research 78 (13_Supplement), 2290-2290, 2018 | 1 | 2018 |
| CellMinerCDB for Integrative Genomics and Pharmacogenomics Analyses of Cancer Cell Lines V Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, F Iorio, ... | | 2018 |
Augustin LunaResearch Associate | Dept. of Data Science, Dana-Farber Cancer Institute, Harvard Medical SchoolVerified email at mail.nih.gov
