Margot Sunshine
Margot Sunshine
Systems Analyst
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Cited by
Cited by
GoMiner: a resource for biological interpretation of genomic and proteomic data
BR Zeeberg, W Feng, G Wang, MD Wang, AT Fojo, M Sunshine, ...
Genome biology 4 (4), 1-8, 2003
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ...
Cancer research 72 (14), 3499-3511, 2012
High-Throughput GoMiner, an'industrial-strength'integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common …
BR Zeeberg, H Qin, S Narasimhan, M Sunshine, H Cao, DW Kane, ...
BMC bioinformatics 6, 1-18, 2005
CellMiner: a relational database and query tool for the NCI-60 cancer cell lines
UT Shankavaram, S Varma, D Kane, M Sunshine, KK Chary, ...
BMC genomics 10 (1), 1-10, 2009
MatchMiner: a tool for batch navigation among gene and gene product identifiers
KJ Bussey, D Kane, M Sunshine, S Narasimhan, S Nishizuka, ...
Genome biology 4, 1-7, 2003
CellMinerCDB for integrative cross-database genomics and pharmacogenomics analyses of cancer cell lines
VN Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, ...
Iscience 10, 247-264, 2018
Using CellMiner 1.6 for Systems Pharmacology and Genomic Analysis of the NCI-60CellMiner for Systems Pharmacology
WC Reinhold, M Sunshine, S Varma, JH Doroshow, Y Pommier
Clinical Cancer Research 21 (17), 3841-3852, 2015
RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDBRNA Sequencing of the NCI-60
WC Reinhold, S Varma, M Sunshine, F Elloumi, K Ofori-Atta, S Lee, ...
Cancer research 79 (13), 3514-3524, 2019
The NCI-60 Methylome and Its Integration into CellMinerNCI-60 Methylome
WC Reinhold, S Varma, M Sunshine, V Rajapakse, A Luna, KW Kohn, ...
Cancer research 77 (3), 601-612, 2017
NCI-60 whole exome sequencing and pharmacological CellMiner analyses
WC Reinhold, S Varma, F Sousa, M Sunshine, OD Abaan, SR Davis, ...
PloS one 9 (7), e101670, 2014
AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies
SM Major, S Nishizuka, D Morita, R Rowland, M Sunshine, ...
BMC bioinformatics 7 (1), 1-10, 2006
High resolution copy number variation data in the NCI-60 cancer cell lines from whole genome microarrays accessible through CellMiner
S Varma, Y Pommier, M Sunshine, JN Weinstein, WC Reinhold
PloS one 9 (3), e92047, 2014
Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes
KW Kohn, BR Zeeberg, WC Reinhold, M Sunshine, A Luna, Y Pommier
PLoS One 7 (5), e35716, 2012
A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
A Luna, EI Karac, M Sunshine, L Chang, R Nussinov, MI Aladjem, ...
BMC bioinformatics 12, 1-13, 2011
PathVisio-MIM: PathVisio plugin for creating and editing molecular interaction maps (MIMs)
A Luna, ML Sunshine, MP van Iersel, MI Aladjem, KW Kohn
Bioinformatics 27 (15), 2165-2166, 2011
268 CellMiner: a Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set
Y Pommier, WC Reinhold, M Sunshine, SH Varma, KW Kohn, ...
European Journal of Cancer, 82, 2012
Integrative analysis of pharmacogenomics in major cancer cell line databases using CellMinerCDB
VN Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, ...
bioRxiv, 292904, 2018
CellMiner and CellMiner cross-database (CDB) as a foundation for the exploration of pharmacogenomics through the use of cancerous cell-lines
WC Reinhold, M Sunshine, S Varma, F Elloumi, Y Pommier
Cancer Research 78 (13_Supplement), 2290-2290, 2018
CellMinerCDB for Integrative Genomics and Pharmacogenomics Analyses of Cancer Cell Lines
V Rajapakse, A Luna, M Yamade, L Loman, S Varma, M Sunshine, F Iorio, ...
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