Valentine Svensson
Valentine Svensson
Altos Labs
Verified email at - Homepage
Cited by
Cited by
The technology and biology of single-cell RNA sequencing
AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann
Molecular cell 58 (4), 610-620, 2015
Exponential scaling of single-cell RNA-seq in the past decade
V Svensson, R Vento-Tormo, SA Teichmann
Nature protocols 13 (4), 599-604, 2018
Power Analysis of Single Cell RNA‐Sequencing Experiments
V Svensson, KN Natarajan, LH Ly, RJ Miragaia, C Labalette, IC Macaulay, ...
Nature Methods 14 (4), 381-387, 2017
SpatialDE: identification of spatially variable genes
V Svensson, SA Teichmann, O Stegle
Nature Methods 15 (5), 343, 2018
Droplet scRNA-seq is not zero-inflated
V Svensson
Nature Biotechnology 38 (2), 147-150, 2020
A Python library for probabilistic analysis of single-cell omics data
A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ...
Nature biotechnology 40 (2), 163-166, 2022
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria
T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ...
Science immunology 2 (9), eaal2192, 2017
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
Single-cell RNA-sequencing reveals a continuous spectrum of differentiation in hematopoietic cells
IC Macaulay, V Svensson, C Labalette, L Ferreira, F Hamey, T Voet, ...
Cell reports 14 (4), 966-977, 2016
MERVL/Zscan4 network activation results in transient genome-wide DNA demethylation of mESCs
MA Eckersley-Maslin, V Svensson, C Krueger, TM Stubbs, P Giehr, ...
Cell Reports 17 (1), 179-192, 2016
A curated database reveals trends in single-cell transcriptomics
V Svensson, E da Veiga Beltrame, L Pachter
Database 2020, baaa073, 2020
Interpretable factor models of single-cell RNA-seq via variational autoencoders
V Svensson, A Gayoso, N Yosef, L Pachter
Bioinformatics 36 (11), 3418-3421, 2020
Computational approaches for interpreting sc RNA‐seq data
R Rostom, V Svensson, SA Teichmann, G Kar
FEBS letters 591 (15), 2213-2225, 2017
An atlas of mouse CD4+ T cell transcriptomes
MJT Stubbington, B Mahata, V Svensson, A Deonarine, JK Nissen, ...
Biology direct 10, 1-25, 2015
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition
M Oatley, ÖV Bölükbası, V Svensson, M Shvartsman, K Ganter, K Zirngibl, ...
Nature communications 11 (1), 586, 2020
Protein velocity and acceleration from single-cell multiomics experiments
G Gorin, V Svensson, L Pachter
Genome biology 21, 1-6, 2020
Single-cell analysis at the threshold
X Chen, JC Love, NE Navin, L Pachter, MJT Stubbington, V Svensson, ...
Nature biotechnology 34 (11), 1111-1118, 2016
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ...
Genome biology 17, 1-15, 2016
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ...
Biorxiv, 2020.02. 29.970558, 2020
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