| Fast and compact DNA logic circuits based on single-stranded gates using strand-displacing polymerase T Song, A Eshra, S Shah, H Bui, D Fu, M Yang, R Mokhtar, J Reif Nature nanotechnology 14 (11), 1075-1081, 2019 | 203 | 2019 |
| Localized DNA hybridization chain reactions on DNA origami H Bui, S Shah, R Mokhtar, T Song, S Garg, J Reif ACS nano 12 (2), 1146-1155, 2018 | 145 | 2018 |
| Programming DNA-based biomolecular reaction networks on cancer cell membranes T Song, S Shah, H Bui, S Garg, A Eshra, D Fu, M Yang, R Mokhtar, J Reif Journal of the American Chemical Society 141 (42), 16539-16543, 2019 | 62 | 2019 |
| Renewable Time‐Responsive DNA Circuits S Garg, S Shah, H Bui, T Song, R Mokhtar, J Reif Small 14 (33), 1801470, 2018 | 59 | 2018 |
| Renewable DNA hairpin-based logic circuits A Eshra, S Shah, T Song, J Reif IEEE Transactions on Nanotechnology, 2019 | 53* | 2019 |
| Using strand displacing polymerase to program chemical reaction networks S Shah, J Wee, T Song, L Ceze, K Strauss, YJ Chen, J Reif Journal of the American Chemical Society 142 (21), 9587-9593, 2020 | 46 | 2020 |
| An Overview of DNA‐Based Digital Data Storage X Song, S Shah, J Reif DNA‐and RNA‐Based Computing Systems, 345-352, 2021 | 40* | 2021 |
| Molecular Computation via Polymerase Strand Displacement Reactions S Shah, M Yang, T Song, J Reif Handbook of Unconventional Computing: VOLUME 2: Implementations, 165-179, 2021 | 36* | 2021 |
| Programming temporal DNA barcodes for single-molecule fingerprinting S Shah, AK Dubey, J Reif Nano letters 19 (4), 2668-2673, 2019 | 30 | 2019 |
| DNACloud: A potential tool for storing big data on DNA S Shah, D Limbachiya, MK Gupta arXiv preprint arXiv:1310.6992, 2013 | 29* | 2013 |
| DNA-Based Analog Computing D Fu, S Shah, T Song, J Reif Synthetic Biology: Methods and Protocols, 411-417, 2018 | 20* | 2018 |
| Improved optical multiplexing with temporal DNA barcodes S Shah, AK Dubey, J Reif ACS Synthetic Biology 8 (5), 1100-1111, 2019 | 18 | 2019 |
| Multidimensional data organization and random access in large-scale DNA storage systems X Song, S Shah, J Reif Theoretical Computer Science 894, 190-202, 2021 | 16 | 2021 |
| Nucleic Acid Hairpins: A Robust and Powerful Motif for Molecular Devices S Garg, H Bui, A Eshra, S Shah, J Reif Soft Nanomaterials, 175-199, 2019 | 15* | 2019 |
| ULTRA: Unleash LLMs' Potential for Event Argument Extraction through Hierarchical Modeling and Pair-wise Refinement XF Zhang, C Blum, T Choji, S Shah, A Vempala arXiv preprint arXiv:2401.13218, 2024 | 12 | 2024 |
| Don't Retrain, Just Rewrite: Countering Adversarial Perturbations by Rewriting Text A Gupta, CW Blum, T Choji, Y Fei, S Shah, A Vempala, V Srikumar arXiv preprint arXiv:2305.16444, 2023 | 9 | 2023 |
| The systems biology simulation core library H Panchiwala, S Shah, H Planatscher, M Zakharchuk, M König, A Dräger Bioinformatics 38 (3), 864-865, 2022 | 9 | 2022 |
| Implementing arbitrary CRNs using strand displacing polymerase S Shah, T Song, X Song, M Yang, J Reif International Conference on DNA Computing and Molecular Programming, 21-36, 2019 | 9* | 2019 |
| Temporal DNA barcodes: A time-based approach for single-molecule imaging S Shah, J Reif DNA Computing and Molecular Programming: 24th International Conference, DNA …, 2018 | 9 | 2018 |
| UV‐Micropatterned Miniaturization: Rapid In Situ Photopatterning and Miniaturization of Microscale Features on Shrinkable Thermoplastics X Song, D Fu, S Shah, J Reif Advanced Materials Technologies, 2000146, 2020 | 6 | 2020 |
John ReifA. Hollis Edens Distinguished Professor, Department of Computer Science, Duke UniversityVerified email at cs.duke.edu
