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Weisheng Wu
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
140142012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
19252014
Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
9322014
A GATA-1-regulated microRNA locus essential for erythropoiesis
LC Dore, JD Amigo, CO Dos Santos, Z Zhang, X Gai, JW Tobias, D Yu, ...
Proceedings of the National Academy of Sciences 105 (9), 3333-3338, 2008
4172008
An encyclopedia of mouse DNA elements (Mouse ENCODE)
Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ...
Genome biology 13, 1-5, 2012
3712012
Principles of regulatory information conservation between mouse and human
Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...
Nature 515 (7527), 371-375, 2014
2832014
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
Y Cheng, W Wu, SA Kumar, D Yu, W Deng, T Tripic, DC King, KB Chen, ...
Genome research 19 (12), 2172-2184, 2009
2652009
Molecular epidemiology of colonizing and infecting isolates of Klebsiella pneumoniae
RM Martin, J Cao, S Brisse, V Passet, W Wu, L Zhao, PN Malani, K Rao, ...
MSphere 1 (5), 10.1128/msphere. 00261-16, 2016
2272016
Genome-wide identification of Klebsiella pneumoniae fitness genes during lung infection
MA Bachman, P Breen, V Deornellas, Q Mu, L Zhao, W Wu, JD Cavalcoli, ...
MBio 6 (3), 10.1128/mbio. 00775-15, 2015
1842015
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ...
Genome research 21 (10), 1659-1671, 2011
1482011
An encyclopedia of mouse DNA elements (Mouse ENCODE)
EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ...
Genome Biol 13 (8), 418, 2012
1472012
Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
N Dogan, W Wu, CS Morrissey, KB Chen, A Stonestrom, M Long, ...
Epigenetics & chromatin 8, 1-21, 2015
1332015
The pathogenic potential of Proteus mirabilis is enhanced by other uropathogens during polymicrobial urinary tract infection
CE Armbruster, SN Smith, AO Johnson, V DeOrnellas, KA Eaton, A Yep, ...
Infection and immunity 85 (2), 10.1128/iai. 00808-16, 2017
1132017
Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
M Pimkin, AV Kossenkov, T Mishra, CS Morrissey, W Wu, CA Keller, ...
Genome research 24 (12), 1932-1944, 2014
1102014
Genome-wide transposon mutagenesis of Proteus mirabilis: Essential genes, fitness factors for catheter-associated urinary tract infection, and the impact of …
CE Armbruster, V Forsyth-DeOrnellas, AO Johnson, SN Smith, L Zhao, ...
PLoS pathogens 13 (6), e1006434, 2017
952017
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
W Wu, CS Morrissey, CA Keller, T Mishra, M Pimkin, GA Blobel, MJ Weiss, ...
Genome research 24 (12), 1945-1962, 2014
932014
Complete genome sequence of Klebsiella pneumoniae strain ATCC 43816 KPPR1, a rifampin-resistant mutant commonly used in animal, genetic, and molecular biology studies
CA Broberg, W Wu, JD Cavalcoli, VL Miller, MA Bachman
Genome announcements 2 (5), 10.1128/genomea. 00924-14, 2014
642014
TnseqDiff: identification of conditionally essential genes in transposon sequencing studies
L Zhao, MT Anderson, W Wu, HL T. Mobley, MA Bachman
BMC bioinformatics 18, 1-11, 2017
492017
Identification of pathogenicity-associated loci in Klebsiella pneumoniae from hospitalized patients
RM Martin, J Cao, W Wu, L Zhao, DM Manthei, A Pirani, E Snitkin, ...
Msystems 3 (3), 10.1128/msystems. 00015-18, 2018
442018
Bioinformatics analysis of whole exome sequencing data
PJ Ulintz, W Wu, CM Gates
Chronic Lymphocytic Leukemia: Methods and Protocols, 277-318, 2019
402019
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Articles 1–20