Tommaso Andreani

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Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Huidong ChenValo HealthVerified email at valohealth.com
Luca PinelloAssociate Professor, MGH/Harvard Medical School/BROAD InstituteVerified email at mgh.harvard.edu
Caleb LareauMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Michael E. VinyardHarvard University, Broad Institute of MIT and Harvard, Massachusetts General HospitalVerified email at g.harvard.edu
Sara P. GarciaMolecular Pathology Unit, Massachusetts General HospitalVerified email at mgh.harvard.edu
Kendell ClementAssistant Professor, University of UtahVerified email at utah.edu
Bart DeplanckeProfessor in Systems Biology and Genetics at EPFLVerified email at epfl.ch
Maroun S. Bou SleimanScientist, previously at EPFLVerified email at alumni.epfl.ch
Steffen AlbrechtResearch Fellow at the University of AucklandVerified email at auckland.ac.nz
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Virginia SavovaSenior Director, SanofiVerified email at sanofi.com
Franck RapaportSanofiVerified email at rockefeller.edu
Emanuele de RinaldisVP, Global Head of Precision Medicine & Computational Biology at SanofiVerified email at sanofi.com
Milad Rafiee VahidPostdoctoral Researcher, Stanford UniversityVerified email at stanford.edu
Reza Olfati-SaberGlobal Head of AIVerified email at sanofi.com

Tommaso Andreani

Sr. Principal Data Scientist Sanofi

Verified email at sanofi.com

Computational Biology Machine Learning (epi)Genomics Precision Medicine Biomarker Discovery


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Assessment of computational methods for the analysis of single-cell ATAC-seq data H Chen, C Lareau, T Andreani, ME Vinyard, SP Garcia, K Clement, ... Genome Biology, 2019	254	2019
GADD45 promotes locus-specific DNA demethylation and 2C cycling in embryonic stem cells KM Schüle, M Leichsenring, T Andreani, V Vastolo, M Mallick, ... Genes & Development, 2019	29	2019
cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel MV Frochaux, M Bou Sleiman, V Gardeaux, R Dainese, B Hollis, ... Genome Biology, 2020	11	2020
Expression and subcellular localization of USH1C/harmonin in human retina provides insights into pathomechanisms and therapy K Nagel-Wolfrum, RB Fadl, MM Becker, AK Wunderlich, J Schäfer, ... Human Molecular Genetics, 2022	9*	2022
Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data T Andreani, L Slot, S Gabillard, C Struebing, C Reimertz, V Yaligara, ... NAR Genomics and Bioinformatics, 2022	9	2022
RNA sequencing of human peripheral blood cells indicates up-regulation of immune-related genes in Huntington’s disease MA Andrade-Navarro, K Muehlenberg, E Spruth, N Mah, ... Frontiers in Neurology, 2020	6	2020
Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes M Bou Sleiman, MV Frochaux, T Andreani, D Osman, R Guigo, ... Genome Biology, 2020	5	2020
DiSiR: fast and robust method to identify ligand–receptor interactions at subunit level from single-cell RNA-sequencing data MR Vahid, AH Kurlovs, T Andreani, F Auge´, R Olfati-Saber, E de Rinaldis, ... NAR Genomics and Bioinformatics, 2023	4	2023
Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation S Albrecht, T Andreani, MA Andrade, JF Fontaine PLoS One 270043, 2022	3*	2022
Computational identification of cell-specific variable regions in ChIP-seq data T Andreani, S Albrecht, JF Fontaine, M Andrade Nucleic Acids Research, 2020	3	2020
From DNA sequences to cell types by detecting regulatory genomic regions in sequencing data T Andreani Johannes Gutenberg University of Mainz, 2019		2019
Production of collagen I and fibronectin in human fibroblasts and adipose derived stem cells treated with ascorbic acid T Andreani Series in Applied Sciences - Mathematical Modelling, Numerical and Data …, 2018		2018

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