| Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant, MA Calderwood, ... Nature 487 (7408), 491-495, 2012 | 415 | 2012 |
| Warped AdS3 black holes D Anninos, W Li, M Padi, W Song, A Strominger Journal of High Energy Physics 2009 (03), 130, 2009 | 387 | 2009 |
| Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks M Fischer, P Grossmann, M Padi, JA DeCaprio Nucleic acids research 44 (13), 6070-6086, 2016 | 301 | 2016 |
| Higher-order corrections to mass-charge relation of extremal black holes Y Kats, L Motl, M Padi Journal of High Energy Physics 2007 (12), 068, 2007 | 229 | 2007 |
| Viral perturbations of host networks reflect disease etiology N Gulbahce, H Yan, A Dricot, M Padi, D Byrdsong, R Franchi, DS Lee, ... PLoS computational biology 8 (6), e1002531, 2012 | 120 | 2012 |
| Non-supersymmetric attractor flow in symmetric spaces D Gaiotto, W Li, M Padi Journal of High Energy Physics 2007 (12), 093, 2007 | 119 | 2007 |
| The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes GA Müller, M Quaas, M Schümann, E Krause, M Padi, M Fischer, ... Nucleic acids research 40 (4), 1561-1578, 2012 | 114 | 2012 |
| Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis J Cheng, DE Park, C Berrios, EA White, R Arora, R Yoon, T Branigan, ... PLoS pathogens 13 (10), e1006668, 2017 | 111 | 2017 |
| Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development T Pearson, JG Caporaso, M Yellowhair, NA Bokulich, M Padi, DJ Roe, ... Cancer Medicine 8 (2), 617-628, 2019 | 87 | 2019 |
| Merkel cell polyomavirus small T antigen promotes pro-glycolytic metabolic perturbations required for transformation C Berrios, M Padi, MA Keibler, DE Park, V Molla, J Cheng, SM Lee, ... PLoS pathogens 12 (11), e1006020, 2016 | 79 | 2016 |
| Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor DA Fine, O Rozenblatt-Rosen, M Padi, A Korkhin, RL James, G Adelmant, ... Public Library of Science 8 (10), e1002949, 2012 | 72 | 2012 |
| Canonical NF-κB activation is essential for Epstein-Barr virus latent membrane protein 1 TES2/CTAR2 gene regulation BE Gewurz, JC Mar, M Padi, B Zhao, NP Shinners, K Takasaki, E Bedoya, ... Journal of virology 85 (13), 6764-6773, 2011 | 60 | 2011 |
| Detecting phenotype-driven transitions in regulatory network structure M Padi, J Quackenbush NPJ systems biology and applications 4 (1), 16, 2018 | 38 | 2018 |
| Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning AW Watson, AD Grant, SS Parker, S Hill, MB Whalen, J Chakrabarti, ... Cell reports 35 (13), 109293, 2021 | 37 | 2021 |
| Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators M Padi, J Quackenbush BMC systems biology 9 (1), 1-17, 2015 | 35 | 2015 |
| Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates type 2 diabetes associated genes A Sharma, A Halu, JL Decano, M Padi, YY Liu, RB Prasad, J Fadista, ... NPJ systems biology and applications 4 (1), 25, 2018 | 32 | 2018 |
| Nac1 coordinates a sub-network of pluripotency factors to regulate embryonic stem cell differentiation M Malleshaiah, M Padi, P Rué, J Quackenbush, A Martinez-Arias, ... Cell reports 14 (5), 1181-1194, 2016 | 32 | 2016 |
| Integration of metabolomics and transcriptomics reveals convergent pathways driving radiation-induced salivary gland dysfunction L Meeks, D De Oliveira Pessoa, JA Martinez, KH Limesand, M Padi Physiological Genomics 53 (3), 85-98, 2021 | 11 | 2021 |
| Orientiholes F Denef, M Esole, M Padi Journal of High Energy Physics 2010 (3), 1-44, 2010 | 11 | 2010 |
| GLUT3/SLC2A3 is an endogenous marker of hypoxia in prostate cancer cell lines and patient-derived xenograft tumors JM Ryniawec, MR Coope, E Loertscher, V Bageerathan, ... Diagnostics 12 (3), 676, 2022 | 7 | 2022 |
